Corynebacterium bovis: CBOVI_01775
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Entry
CBOVI_01775 CDS
T09479
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cbov
Corynebacterium bovis
Pathway
cbov03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbov00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CBOVI_01775 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbov03021
]
CBOVI_01775 (rpoB)
03400 DNA repair and recombination proteins [BR:
cbov03400
]
CBOVI_01775 (rpoB)
Enzymes [BR:
cbov01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CBOVI_01775 (rpoB)
Transcription machinery [BR:
cbov03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CBOVI_01775 (rpoB)
DNA repair and recombination proteins [BR:
cbov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CBOVI_01775 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WJY76895
LinkDB
All DBs
Position
476816..480307
Genome browser
AA seq
1163 aa
AA seq
DB search
MAVSRQTSSTAGIPGASHRYSFAKINAPIEVPGLLDLQRESFAWLVGTPEWRARRQAEVG
DGVRVTSGLEDILEELSPIEDYSENMSLTFSEPRFDEVKNTIDECKDKDINYSAPLYVTA
EFTNSMSGEIKSQTVFIGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDESIDSSTER
PLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGLTTQEITERFGFSEI
MMSTLEKDGVANTDEALLEIYRKQRPGESPTRDSAQALLENSLFRPKRYDLAKVGRYKVN
RKLGLGGDTEGTMTLTEEDILTTIEYLVRLHAGEKTMTSPEGVEIAIGVDDIDHFGNRRL
RTVGELIQNQVRVGLSRMERVVRERMTTQDAESITPTSLINVRPVSAAIREFFGTSQLSQ
FMDQNNSLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIG
SLSSYARVNPFGFIETPYRRVENGQITDVVDYLTADEEDRHVVAQANTPFDEDKRFTEDR
IEVRLKGGDVEVVPVDQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPL
LRSEAPFVGTGMELRAAYDAGDVIITPKAGVVEFVSADYITVMDDDGVRDTYMLRKFERT
NQGTCYNQKPLVDEGDRVEAGQAIADGPGTDNGEMALGKNLLVAFMPWEGHNYEDAIILN
QRMVEEDVLTSIHIEEHEIDARDTKLGPEEITRDIPNVGEDVLADLDDRGIVRIGADVRD
GDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGESGKVIGVRVFSREYD
DDLAPGVNEMVRVYVAQKRKIQDGDKLAGRHGNKGVVGRILPAEDMPFLPDGTPVDIILN
THGVPRRMNIGQVLEIHLGWLAKAGWSVDTNSDDPKIKAMLEQLPEELYDVPADSLTATP
VFDGASNEELSGLLRSSRPNRDGIRLVDDYGKAELIDGRSGEPFPYPVSVGYMYMLKLHH
LVDEKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMQAYGAAYTLQELLTIKSDD
VVGRVKVYEAIVKGENIPDPGIPESFKVLLKELQSLCLNVEVLAADGTPMELSSTDDELD
HANAALGINLSRDERPDADSDVG
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctcccgccagaccagttcaacggccggaattcccggagcttcgcaccgctac
tccttcgcgaagatcaacgcccccatcgaggttcccggtctcctggacctgcagcgcgag
tcgttcgcgtggctcgtcgggaccccggagtggcgcgcccgccgccaggcggaggtgggc
gacggcgtccgcgtgaccagcggactggaggacatcctcgaggaactgtcccccatcgag
gattactcggagaacatgtcgctcaccttctccgagccgcgcttcgacgaggtgaagaac
accatcgacgagtgcaaggacaaggacatcaactactccgcgccgctctacgtcaccgcg
gagttcaccaacagcatgtccggcgagatcaagagccagaccgtcttcatcggcgacttc
ccgatgatgacggacaagggcacgttcatcatcaacggcaccgagcgtgtcgtcgtgtcg
cagctcgtccggtccccgggcgtgtacttcgacgagtccatcgacagctccacggagcgt
ccgctgcactccgtcaaggtcatcccgtcccgtggtgcatggctggagttcgacgtcgac
aagcgcgacaccgtcggtgtccgcatcgaccgcaagcgtcgtcagccggtgacggtcctg
ctcaaggccctcggtctgacgacccaggagatcaccgagcgcttcgggttctccgagatc
atgatgtccaccctcgagaaggacggcgtcgcgaacaccgacgaggccctcctcgagatc
taccgcaagcagcgcccgggtgagtcgccgacgcgcgactccgcgcaggcgctcctcgag
aacagcttgttccggccgaagcgctacgacctcgcgaaggtcggccgctacaaggtcaac
cggaagctcggcctcggcggggacaccgagggcacgatgaccctcaccgaggaggacatc
ctcacgacgatcgagtacctcgtgcgcctccacgccggggagaagaccatgacctccccg
gagggcgtggagatcgccatcggtgtcgacgacatcgaccacttcggcaaccgtcgcctc
cgcacggtcggcgagctcatccagaaccaggtccgcgtgggcctgtcccgcatggagcgc
gtcgtccgcgagcggatgacgacgcaggacgccgagtcgatcacgccgacgtcgctcatc
aacgtccgcccggtctcggccgcgatccgcgagttcttcggcacgtcccagctctcgcag
ttcatggaccagaacaactccctgtccggcctcacgcacaagcgtcgcctctcggccctc
ggcccgggcggcctgtcccgtgagcgcgccggcctcgaggtccgtgacgtgcacccgtcg
cactacggccgcatgtgcccgatcgagacgcctgagggcccgaacatcggcctcatcggc
tcgctgtcctcctacgcgcgggtcaaccccttcggcttcatcgagacgccgtaccgccgc
gtcgagaacgggcagatcaccgacgtcgtcgactacctcacggcggacgaggaggaccgg
cacgtcgtcgcccaggcgaacacgcccttcgacgaggacaagcggttcaccgaggaccgc
atcgaggtgcgcctgaagggcggcgacgtggaggtcgtgcccgtcgatcaggtggactac
atggacgtctccccgcggcagatggtctccgtggcgacggcgatgatcccgttcctcgag
cacgacgacgccaaccgtgccctcatgggcgcgaacatgcagcgtcaggccgtcccgctg
ctccgctccgaggccccgttcgtgggcaccggcatggagctgcgcgccgcctacgacgcc
ggcgacgtcatcatcaccccgaaggccggtgtcgtcgagttcgtctcggccgactacatc
acggtcatggacgacgacggcgtgcgggacacctacatgctccgcaagttcgagcgcacc
aaccagggcacctgctacaaccagaagcccctcgtcgacgagggtgaccgcgtcgaggcc
ggccaggccatcgccgacggccccggcaccgacaacggtgagatggcgctgggcaagaac
ctgctcgtcgccttcatgccgtgggagggccacaactacgaggacgcgatcatcctcaac
cagcgcatggtggaggaggacgtgctcacctcgatccacatcgaggagcacgagatcgac
gcccgcgacacgaagctcggcccggaggagatcacccgggacatcccgaacgtcggcgag
gacgtcctcgcggacctcgacgaccgcggcatcgtgcgcatcggcgccgacgtccgcgac
ggcgacatcctcgtcggcaaggtcacgccgaagggcgagaccgagctgaccccggaggag
cgcctgctccgtgcgatcttcggcgagaaggcccgtgaggtccgcgacacgtcgatgaag
gtcccgcacggcgagtccggcaaggtcatcggtgtccgggtgttctcgagggagtacgac
gacgacctcgcccccggtgtcaacgagatggtccgggtgtacgtcgcccagaagcgcaag
atccaggacggtgacaagctcgcgggccgccacggcaacaagggtgtcgtcggccgcatc
ctccccgcggaggacatgccgttcctcccggacggcaccccggtcgacatcattctcaac
acccacggtgtgccgcgtcgtatgaacatcggccaggtgctggagatccacctcggctgg
ctggcgaaggccggctggtccgtagacacgaactccgacgacccgaagatcaaggccatg
ctcgagcagctccccgaggagctgtacgacgtgccggccgactcgctcaccgcgacgccg
gtgttcgacggcgcctcgaacgaggagctgtccggcctgctccggtcctcccgcccgaac
cgcgacggcatccgcctcgtcgacgactacggcaaggccgagctcatcgacggccggtcc
ggcgagcccttcccgtacccggtgtccgtgggctacatgtacatgctcaagctgcaccac
ctcgtggacgagaagatccacgcgcggtccacgggcccgtactccatgatcacccagcag
ccgctcggtggtaaggcccagttcggtggacagcgtttcggcgagatggaggtgtgggcc
atgcaggcgtacggcgcggcctacaccctccaggaactcctcacgatcaagtccgacgac
gtcgtcggccgtgtgaaggtgtacgaggccatcgtcaagggcgagaacatcccggacccg
ggcatccccgagtccttcaaggtcctcctcaaggagctccagtcgctgtgcctcaacgtc
gaggtgctcgcggcggacggtacgccgatggagctcagctccaccgacgacgagctcgac
cacgccaacgccgccctcggcatcaacctctcccgtgacgagcggcccgacgccgacagt
gacgtcgggtag
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