Ciconia boyciana (Oriental stork): 140643591
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Entry
140643591 CDS
T10948
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cboy Ciconia boyciana (Oriental stork)
Pathway
cboy03013
Nucleocytoplasmic transport
cboy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cboy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140643591 (UPF1)
03015 mRNA surveillance pathway
140643591 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cboy03019
]
140643591 (UPF1)
Enzymes [BR:
cboy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
140643591 (UPF1)
5.6.2.5 RNA 5'-3' helicase
140643591 (UPF1)
Messenger RNA biogenesis [BR:
cboy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
140643591 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
140643591 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
140643591
NCBI-ProteinID:
XP_072701695
LinkDB
All DBs
Position
24:4677711..4700861
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AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcacctttctggacaccgaggag
gccgagttgctcggagccgacactcagggctccgagttcgagttcaccgacttcactctt
cccagccagacccaaaccccgcccgggcccgggcaggcggggccgggacagggccaaggg
ccccccggagcggggcagggaccgccaggaccgatcgaagcacaggttaacggacctgat
ggcattctgcagaatggagctgtggatgataacgtggctaaaaccagccagcttctggca
gaattgaattttgaagaagatgaagaagatacctattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcttgtgtggtttactgtaacaccagcaaa
aagtggttctgtaatgggcgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcgaagtgcaaagaggtgactctccataaagatggacctctaggagagactgtcttg
gaatgttataactgtggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgtggttgttttgctgtgcaggcagccatgtgccagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagatcgctgtttcctttcatgg
ctggtaaagattccatctgaacaggaacagttgagagcacggcagattacggctcaacag
attaacaaactggaagaactttggaaggaaaatccatctgcaacccttgaggacttagaa
aagcctggtgttgatgaagaaccacagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctagtcaagcttgaggcagactatgacaagaaactcaag
gagtctcagacccaagataacatcacggtcagatgggacctgggcttgaacaagaaaaga
attgcttattttactttgccaaagactgattcagatatgcgtcttatgcaaggagatgag
atctgcttgaggtataaaggagacctggcccctttatggaagggaattggtcatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccattgagctgaggagcagc
gttggagcgcctgtggaagttactcataacttccaagtggattttgtatggaagtctact
tcatttgacagaatgcagagtgctttaaaaacattcgctgtggacgagacttcagtgtct
gggtacatctatcacaaactgttaggtcatgaggtagaagatgtaattattaaatgccag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtaccggaaaa
accgtgacatcagccacaatcgtctatcatctggctagacagggcaatgggcctgtgtta
gtctgtgctccaagtaatatagctgtagatcagttgactgagaagatccatcaaactggg
ctgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcctgtatccttc
ttggcattgcataaccagatcagaaacatggatagcatgccagagcttcagaaactgcag
cagcttaaagatgaaactggagaactgtcatctgctgatgagaaacgttaccgtgcactg
aaacgaacagcagagcgtgaattgcttatgaatgcagatgtgatctgttgcacgtgtgtg
ggagctggtgatccaagacttgcaaaaatgcagttccgctccattctgattgatgaaagc
acacaggctactgagccagagtgcatggtgccagttgtcctgggagcaaagcagcttatt
cttgtaggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaagctgccaaggct
ggtctctctcagtctcttttcgagaggcttgtggtgctggggattcgtccgattcgcctg
caggtgcagtatcgcatgcatcctgcactcagtgcttttccatccaatatcttctatgag
ggttcactccagaatggcgttactgcagcggaccgtgtgaaaaaaggttttgatttccag
tggccgcagccagataagccaatgtttttctatgttacacaaggacaggaagaaattgcc
agctcaggcacctcttacctgaacaggacggaagctgccaatgtggagaagataactaca
aagctattgaaagctggtgccaaaccagatcagattggcattattactccttatgaaggt
caacgatcctatctggtgcagtacatgcaattcagtggttccttgcatacgaagctctac
caggaagtggaaattgcaagtgtggatgccttccagggacgagagaaggactttattatc
ctttcttgtgtgagggccaatgaacaccaaggaatagggtttctgaatgaccccaggcgt
cttaatgtagctcttacaagagcaaggtatggagtaattattgttgggaacccaaaagcg
ctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaaggttctg
gtggagggaccactgaataacctccgggaaagccttatgcagttcagcaagccccggaag
cttgtcaataccatcaacccaggtgcccgtttcatgactactgccatgtatgatgcacgt
gaggctattattccaggatctgtctatgaccggagcagtcaagggcgcccatccaacatg
tacttccagacccacgaccagatcgggatgattagtgctggccccagccacgtcactgct
atgaacattcctatcccgttcaaccttgtgatgccaccgatgccaccaccgggatacttt
ggccaggctaacggaccagccgcaggccgtggggcgccaaaaggaaagactggtcgtggt
gggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttccaaatagt
caagcgagccaagatgtggtgtcccaacctttctcccagggtccactgactcaggggtat
atctccatgagtcagccatcacagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtcacaggac
tctacttaccagggtgaacgtgcatatcaacatggcggagtgacgggactgtcacagtat
tag
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integrated database retrieval system
