Ciconia boyciana (Oriental stork): 140644847
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Entry
140644847 CDS
T10948
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cboy Ciconia boyciana (Oriental stork)
Pathway
cboy03013
Nucleocytoplasmic transport
cboy03015
mRNA surveillance pathway
cboy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cboy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140644847 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
140644847 (DDX39B)
03015 mRNA surveillance pathway
140644847 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cboy03019
]
140644847 (DDX39B)
03041 Spliceosome [BR:
cboy03041
]
140644847 (DDX39B)
Enzymes [BR:
cboy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140644847 (DDX39B)
Messenger RNA biogenesis [BR:
cboy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140644847 (DDX39B)
Spliceosome [BR:
cboy03041
]
Complex C
Other components
EJC/TREX
140644847 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140644847 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
140644847
NCBI-ProteinID:
XP_072704099
LinkDB
All DBs
Position
29:complement(1706998..1718847)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENAAGGDGAEAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtggacaacgagctgctggactatgaggacgacgaggtggagaac
gcggcggggggcgacggggccgaggcgccgcccaagaaggacgtgaagggctcctacgtc
tccatccacagctccggcttccgcgatttcctcctcaagcccgagctgctccgcgccatc
gtcgactgcggcttcgagcacccctccgaagtgcagcacgagtgcatcccgcaggccatc
ctgggcatggacgtgctgtgccaggccaagtccggcatgggcaagacggccgtcttcgtg
ctggccaccctgcagcagctggagcccgtcacggggcaggtgtcggtgctggtgatgtgt
cacacgcgggagctggccttccagatcagcaaggagtacgagcggttctccaagtacatg
cctagcgtgaaggtggcggtgtttttcggggggctgtcgatcaagaaggacgaggaggtg
ctgaagaagaattgcccccacatcgtggtggggaccccgggccgcatcctggccctggcc
cgcaacaagagcctcaacctgaagcacatcaagcacttcatcctggacgagtgcgacaag
atgctcgagcagctcgacatgcgtcgggacgtccaggagattttccgcatgaccccgcac
gaaaagcaggtcatgatgttcagcgccacgctcagcaaggaaatccgccccgtctgccgc
aaattcatgcaagaccccatggagatcttcgtggacgacgagacgaagctgacgctgcac
gggctgcagcagtactacgtcaagctgaaggacaacgagaagaaccgcaagctcttcgac
ctgctcgacgtcctcgagttcaaccaggtggtgatcttcgtcaagtcggtgcagcgctgc
atcgccctggcccagctcctggtggagcagaacttcccggccatcgccatccaccgcggc
atgccccaggaggagcggctctcgcggtaccagcagtttaaggatttccagcgccgcatc
ctggtggccaccaacctgtttggccgcgggatggacatcgagagggtcaacatcgccttc
aactacgacatgcccgaggactccgacacctacctgcaccgggtggcgcgggcggggcgc
ttcggcaccaagggcctggccatcaccttcgtgtcggacgagaacgacgccaagatcctc
aacgacgtccaggaccgcttcgaggtcaacatcagcgagctgcccgacgagatcgacatc
tcctcctacatcgagcagacccgataa
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integrated database retrieval system
