Ciconia boyciana (Oriental stork): 140645142
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Entry
140645142 CDS
T10948
Symbol
XAB2
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cboy Ciconia boyciana (Oriental stork)
Pathway
cboy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cboy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140645142 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cboy03019
]
140645142 (XAB2)
03041 Spliceosome [BR:
cboy03041
]
140645142 (XAB2)
Messenger RNA biogenesis [BR:
cboy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
140645142 (XAB2)
Spliceosome [BR:
cboy03041
]
Complex B
Other components
Prp19-related factors
140645142 (XAB2)
Complex C
140645142 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
TPR_19
Suf
TPR_7
TPR_15
ARM_TT21_C
ARM_TT21
TPR_1
PPR
TPR_16
Motif
Other DBs
NCBI-GeneID:
140645142
NCBI-ProteinID:
XP_072704481
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All DBs
Position
31:complement(1579718..1606953)
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AA seq
893 aa
AA seq
DB search
MADEAEMPEREEPGPGAGPGPGPGPGPGPGAGLELELELERPELRFEEEDVQHEEELLRN
PFSVRCWLRYAQARRXGPPARLNLLFERALRELPGSYKLWYQYLRQRGQQVKGRCPGDPA
YEEANGCHERALVFMHKIPPIVMIIPPAPVITGCRIWLDYCQFLVEQGRITRTRRTFDRA
LRALPITQHHRVWPLYLQFVRRYPLPETAVRVYRRYLKLSPESAEEYVGYLRSVGRLDEA
AVRLARLVNDERFVSKEGKSNYQLWQELCELLSQHPERVRSLDAGAIIRGGLTRFTDQLG
RLWGALADCYIRSGHFEKARDVYEEAVQTVMTVRDFTQVFDSYAQFEESVIAAKMETVAE
LGREEDEEVELELRLARFEQLMARRPLLLNSVLLRQNPHNVHEWHKRVQLYQGRPEQIIN
TYTEAVRTVDPFKATGRPHGLWVAFARFYEDNGQLDDARTILTKATRVRFRQVEDLAAVW
CEFGEMELRHENYDEALRILRKATALPAKRAEYFDSTEPVQNRLYKSLKVWSMLADLEES
LGTFQSTKAVYDRILDLRIATPQIVINYGLFLEEHGYFEESFKAYERGIALFRWPNVADI
WHTYLSKFVARYGGRKLERARDLFEQALDGCPPKYAKTIYLLYAKLEEEFGLARHAMGVY
ERATRAVLPAQQHEMFNIYIKRAAELYGVTHTRPIYQKAIEVLGDDAARELCLRFADMEC
KLGEVDRARAIYTYCSQICDPRITGTFWQTWKDFEIRHGNEDTIREMLRIKRSVQATYNT
QVNFMASQMLKVYSNATGTVSDLAPGQSGLDDMKLLEQRAEQLAAEAQRDAPRPKEKVLF
VRAEGPREALAALSQQGNPDEIDLGDEDEPEPDEVQLEQKRVPSSVFGGLKDD
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggcggagatgccggagcgggaggagccggggccgggagcggggccgggg
ccggggccggggccggggccggggccgggagcggggctggagctggagctggagctggag
cggcccgagctgcgcttcgaggaggaggacgtgcagcacgaggaggagctcctgcgcaac
cccttctcggtgcgctgctggctgcgctacgcccaggcccggcgcncggggccgcccgcc
cgcctcaacctcctcttcgagcgcgccctcagggagctgcccggcagctacaagctgtgg
taccagtacctgcggcagcgggggcagcaggtgaaggggcgctgccccggggaccccgcc
tacgaggaggccaacggctgccacgagcgcgccctcgtcttcatgcacaagatacccccg
attgttatgatcatcccccccgctcctgtcataactggatgccgcatctggctggactac
tgccagttcctggtggagcagggccgcatcacgcggacgcgccgcaccttcgaccgggcg
ctgcgggcgctgcccatcacccagcaccaccgcgtctggcccctctacctccagttcgtg
cgccgctaccccctgcccgagaccgccgtccgcgtctaccgccgctacctgaagctgagc
cccgagagcgcggaggagtacgtggggtacctgcgctccgtggggcgcctggacgaggcc
gccgtgcgcctggcccggctcgttaacgacgagcgcttcgtctccaaggagggcaagtct
aattaccagctgtggcaggagctgtgcgagctgctctcccagcacccggagcgggtgcgc
tcgctggacgcgggggccatcatccgggggggcctcacccgcttcaccgaccagctgggc
cggctctggggcgccctggccgactgctacatccgcagcggccacttcgagaaggcccgg
gacgtctacgaggaggcggtgcagacggtgatgacggtgcgggacttcacccaggtcttc
gacagctacgcccagttcgaggagagcgtcatcgccgccaagatggagacggtcgcggag
ctgggccgggaggaggacgaggaggtggagctggagctgcgcctggcccgcttcgagcag
ctgatggcccggcgcccgctgctgctcaacagcgtcctgctgcgccagaacccccacaac
gtccacgagtggcacaagcgggtgcagctctaccagggacgccccgagcagatcatcaac
acctacacggaggccgtccgcaccgtggaccccttcaaggcgacggggcgcccgcacggg
ctctgggtggccttcgcccgcttctacgaggacaacgggcagctggatgacgcccgcacc
atcctgaccaaggccacccgcgtccgcttccggcaggtggaggacctggccgccgtctgg
tgcgagttcggggagatggagctgcgccacgagaactacgacgaggccctgcgcatcctg
cggaaagccacggcgctgcccgccaagagggccgagtacttcgactccacggagcccgtc
cagaaccgcctctacaagtccctcaaggtctggtccatgctggccgacctggaggagagc
ctgggcaccttccagtccaccaaggcggtgtacgaccgcatcctggacctgcgcatcgcc
accccccagatcgtcatcaactacggcctcttcctggaggagcacggctacttcgaggag
agcttcaaggcctacgagcggggcatcgcgctcttccgctggcccaacgtggcggacatc
tggcacacctacctcagcaagttcgtcgcccgctacggcgggcgcaagctggagcgggcg
cgggacctcttcgagcaggcgctggacggctgcccccccaaatacgccaagaccatctac
ctgctgtacgccaagctggaggaggagtttgggctggcgcggcacgccatgggggtgtac
gagcgcgccacccgcgccgtcctgcccgcccagcagcacgagatgttcaacatctacatc
aagcgagcggccgagctctacggcgtcacccacacccgccccatctaccaaaaggccatc
gaggtgctgggtgacgacgcggcgcgggagctctgcctgcgcttcgccgacatggagtgc
aagctgggggaggtggaccgggcgcgcgccatctacacctactgctcccagatctgcgac
ccccgcatcacgggcaccttctggcagacctggaaggactttgagatccgccacggcaac
gaggacacgatccgggagatgctgcgcatcaagcgcagcgtccaggccacctacaacacc
caggtcaacttcatggcctcccagatgctcaaggtctacagcaacgccaccggcaccgtg
tcggacctggccccggggcagagcggcctggacgacatgaagctgctggagcagcgggcc
gagcagctggcggccgaggcccagcgcgacgccccccgccccaaggagaaggtcctcttc
gtcagggccgagggcccgcgggaggctctggccgccctgtcccagcaggggaaccccgac
gagatcgacctgggggacgaggacgagcccgagcccgacgaggtgcagctggagcagaag
cgggtgccctcctccgtttttgggggcctcaaggacgactga
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