Ciconia boyciana (Oriental stork): 140646214
Help
Entry
140646214 CDS
T10948
Symbol
RGPD4
Name
(RefSeq) ranBP2-like and GRIP domain-containing protein 4 isoform X1
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
cboy Ciconia boyciana (Oriental stork)
Pathway
cboy03013
Nucleocytoplasmic transport
cboy03250
Viral life cycle - HIV-1
Brite
Messenger RNA biogenesis [BR:
cboy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
140646214 (RGPD4)
Chaperones and folding catalysts [BR:
cboy03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
140646214 (RGPD4)
Ubiquitin system [BR:
cboy04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
140646214 (RGPD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ran_BP1
IR1-M
Pro_isomerase
Zn_ribbon_RanBP
WH1
TPR_1
TPR_2
TPR_CcmH_CycH
TPR_14
ANC1_spectrin
ARM_TT21_C
TPR_8
TPR_16
Motif
Other DBs
NCBI-GeneID:
140646214
NCBI-ProteinID:
XP_072705899
LinkDB
All DBs
Position
1:151884161..151918223
Genome browser
AA seq
3047 aa
AA seq
DB search
MMRRTKPEVERYVASVQAAAPSPREKSMKGFLFAKLYFEIKEYELAKRYISTYLSVQERD
PKAHRFLGQIYEAEDNIEKAFGCYKRSVELNPTQKDLVLKIAELLCNNDITDGRAKYWVE
RAAKLFPGSPAVYRLKEQLLDCKGEDGWNQLFDLIQAELYARPDDVYINIRLVALYRSNN
RLRDAVLHCQEAEKKIPLQSSLEWCSCVVETLEEYLESLQDLESDKNNWRAIKKDHLLAY
SSFVKMTLSSRDVQECREALESFDRVLQSVKPYVNGAEELYRTFVEMKGQLYMHAGTLLL
KMAQHNEAQWRAVCELAALCYLISFQVPKSKSKLMKGDQTGQDVLEMLACDRKSQSGHML
LNLSHGKQDFFKEIVESFANKSGSFTLFDSLFESGASRERSFIGTDDIRNVSAQAPVQME
LNKYDIGAVRMHSGSLQHLVWLGLQWNSMSVLPPMRKWLKQLFHLPRETSRLEIDAPESI
CLLDLEVFLLGVVFTSNLQLQEKFNSHYGAHQPQFLPLPVCKQLYTEKQRSWWDAVRTLI
QRKTTPGTGAKLRLIVQHGISTLRTLEKHGLQPALVIHWAKSLQKTGISLNSSYDQKEYI
GRSVYYWKKVLPMLDTIKKKRSIPEPIDPLFKHFHSVDIQVFQVAAYEEEARIAFAMLDA
VDGKTDDALLAFEAIKNVVSYWNLAVIFQRKAEEIENDAMLPEEQEEHKTCLLKSKHYLM
KIIEESSSDMSVTEKLPVSIETVREMLDTVIQELGENDEVVSPVFRNGLSQAVDSEMKHS
TPSPTKFSLSPTKSYKFSPKTPPQWAEDHRCILQMICQQVEALKNEMQEMKLNNSNLNAS
SHRWPAETYGTDTMSEGYQRAQNLHEAPLTVATTGPSAYYSQSPAYNSQYLLRTAATNVT
PTKAPVYGMNRLAPQQHIYAYQQPMHTPPLQNASACMFSQEIYGTPLRFDSPATGLISPR
AGDDYYNYSVPQASTNPPLPGPGYFTKRSVTPPTLKPAESKVIEFPKSKIGQPGTAEGSK
TSLPTPTQSSQPTTFKFNTNFKSNDGDFTFSSLQVATQPANAAFNSSESLLGLLTSDKPL
QDDRYIEQKPVNDHTNSQRNVFNFANKHVPGISFRETVEQNAHKNLGFEKSDMFTVQEPS
KPVFMNSNLDLANRSHETEGGSTHGGDEDDDGPHFDPVVPLPDKIEVKTGEEDEEEFFCN
RAKLFRFDAESKEWKERGIGNVKILKHKVSGKFRLLMRRDQVLKICANHYINTDMKLTPN
AGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAMLFRSKFEEAQNILKTLGSNVETSVT
QSSGTAGETTTQDIKEPSRSFSGTPNFGFQFAKDGVSSESNSKGSLTATSTASGPMTFSF
GKEAPLICPSDECVQHLLKKDQWECKVCLVPNEATAKNCVSCQSPNPDMWETHGTPLTDS
AASFKASDDTVQDKFGSAFAKKEGQWDCSVCLVRNEPTASRCVACQNPNKTNTVVSGQQT
SFKHGQATAPKAVQNDLGTAFSKKEGQWECSVCLVQNEAKDVNCCSCQNPKSQSQPNVSI
PTVQASPAPRFGSTADASKPQKNGFEGLFTKKEGQWDCSICLVRNEGSSPACVACQTPNP
SGKPAGASSSTPTSGLKSKLPESTVGTTDFKCDFLEEGFKFGHDEQGKTPSFTFQIPSDT
EAKSAKEGFSFSMPVPAAGFKFGIQESSKNTTKKDEPSKEYTTGGLKSIDEKDKKELPSD
SGITFQFQETANKEKGDCVFGQNSSTLTFAELAKSTPGEGFQFGKKDPNFKGFSGTGEKL
FSSQDSKMDHKANTSADLGEKDDDVYKTEDSDDIHFEPIVQMPEKVEPFTGEEDEKVLYS
QRVKLFRFDPETSQWKERGVGNLKILKNEVNGKVRILMRREQVLKVCANHWITTTMNLKQ
LSGSDKAWMWMANDFSDGDAKLEHLAAKFKTPEQAEEFKQKFEECQRLLLDIPLQTPHKL
VDTGRTAQLIQKAEEMKCGLKDLKTFLTDDKTKLSEEENVNSVCASSTSDLVIKPHAEST
GPTLEWDNYDLREEALDDSVSSSVYASPLASSPVRKNLFRFGESTTGFSFSFKSALSPSK
SPAKQNQSRTSVGTDEDSDVTQEEERDGQYFEPVVPLPDLVEVTSGEENEQVVFSHRAKL
YRYDKDANQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMNMQQMKGSD
RAWVWTACDFADGERKVELLAVRFKLQDVADSFKQIFDEAKHAQERDTLITPLSSRANTP
KESPCGKNAVAVLEETTRERTDLSHGDDTSDVTVEVADVSNSSETPTKTVVSPPKFVFGS
ESVKSIFSNEKSKTFTFGNTSATGSLFGFSFNPPRKSEDHIPMSQNTAEKELEVSEPPKS
SSVPQKPLDSKVDNLPTSIQDGPSNFSFRILEKAEKTTMSEDDLPSDEVIIVYELTPTPE
QRALAGFLKLPSTFFCYKNKPGYVSDDDDDEDYETAVKKLNGRLYPSDSEEKKKLQDLVK
VGMTGKSEFDSERECVTAWEKKPAPEEKDKAEALQVPSTSVCGVSSDTEDDSPEDFQTEV
KIQETKENEVTSSTDLVCTSKEEVPTPSTGEVTVFVQSAANNEEPDSTTETVHVSQALSG
ADDKPVDLSTKKSDLDCSESTQENRIISFGFGNTAGLSFADLASKNSGDFAFGSKDKNFK
WANTGAAVFGETACKADEDEGGSDDEVVHSDDIHFEPIVSLPEVEVKSGEEDEEILFKER
AKLYRWDRDAVQWKERGVGEIKILFHTQKKYYRVLMRRDQVLKVCANHVITKEMNLVPSD
TSNNALIWTATDYADGEVKVEQLAVRFKSQEMANSFKRRFEECQLSLSELQKGHLSLAAG
LSKDTNPIVYFEVSADDEPLGHITMELFSNIVPRTAENFRALCTGEKGFGFKNSSFHRIV
TDFVCQGGDITNHDGTGGRSIYGTAFEDENFEVKHTGPGLLSMANKGRDTNNSQFFITLK
KAEHLDFKHVVFGFVKDGMDVVKKIESFGSPKGLVNGRIVITDCGQI
NT seq
9144 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggcgcacgaagcccgaagtggagcggtacgtcgcctctgtgcaggccgccgcg
ccttcccccagagagaaatcgatgaaaggattcctctttgctaagctgtattttgaaata
aaagaatatgaacttgctaaaaggtatatatctacatacctcagtgtacaggagagagat
cccaaagcacacagatttcttggacaaatttacgaagctgaggataacatagaaaaagct
tttgggtgttacaagcgctctgtggagttgaacccaacacagaaagatcttgtgttgaag
attgcagagttactatgcaataacgacattactgatgggagagcaaaatactgggttgag
agagctgctaagcttttccctgggagtcctgctgtttacaggttgaaggagcagttgctg
gattgtaaaggtgaagatggatggaatcagctttttgacttgattcaagcagaactttat
gcaagaccagatgatgtctacataaacatcagactagttgcgctctaccgttcaaataat
agattaagagatgctgtgctccattgtcaggaggcagagaagaaaataccattgcagtca
agcttggaatggtgttcctgtgttgtagagacgcttgaggaatatctggaatctttacaa
gacttggagtctgataaaaataactggagagctatcaagaaagatcatctgctggcctat
tccagctttgtcaaaatgacactttcttctagagatgttcaggaatgcagagaggcactt
gaaagttttgatcgtgtgcttcagtcagtgaaaccatatgtgaatggggctgaagagttg
tatcgtacctttgtggaaatgaaaggacagctatacatgcatgctggaacattgctactg
aaaatggcccaacacaatgaggcacagtggagagctgtgtgtgaactagcagcattgtgt
tatctgataagtttccaggttcctaaatcaaagtcaaaactaatgaaaggggatcaaact
ggacaagatgtgctagaaatgttggcctgtgatcgaaaaagccagtctggtcatatgctg
ctgaacttaagccatggcaagcaagacttctttaaagagattgtggaatcttttgcaaac
aagagtggttcatttacattgtttgatagcctgtttgagagtggagcttctagagagaga
tcttttattggcacagatgatattcgaaatgtcagtgcacaagcaccagtgcaaatggaa
cttaataaatacgatattggtgctgttcgaatgcacagtggcagtctccagcaccttgtg
tggcttggcttgcagtggaactctatgtcagtcttacccccaatgcgcaaatggttaaaa
cagctttttcacttgcccagagaaacatcaagacttgagatagatgctcctgaatccatt
tgcctgttggaccttgaagtatttctacttggggtggtgttcactagcaacttacaattg
caagagaagtttaattctcactatggcgcacatcagcctcaattcttaccgttgccagtg
tgcaaacagctctataccgaaaagcaaagatcctggtgggatgccgttcgtactcttatt
cagagaaaaacaacaccaggaacaggagcaaaactgaggcttatcgtacagcatggaata
agtactctgcgaacactggagaagcatggccttcaacctgccttagttatacactgggca
aaaagcctgcaaaaaacaggcattagccttaactcctcctacgaccagaaggaatacatt
ggacgaagtgtctactactggaagaaagttttgcctatgctggacactatcaaaaagaag
aggagtattcctgaacctattgatcctctcttcaaacacttccatagtgtagatattcag
gtctttcaggttgcagcatatgaagaagaggcacgtatagcatttgcaatgttggatgca
gttgatggcaaaactgatgatgctttattagcatttgaagctattaagaatgtggtttca
tactggaatcttgctgtgatcttccaaagaaaggcagaagagattgaaaatgatgccatg
ctgccagaagaacaagaagaacacaaaacctgtcttcttaaaagcaagcattatctaatg
aagatcattgaggaaagctcctcagatatgtcagtaactgagaaactgccggtgtctatt
gaaactgtgagggaaatgctagatacagtaatccaggaacttggtgagaatgatgaagtc
gtcagtcctgtcttcagaaatggtctgtcacaagctgtagattcagagatgaaacactcc
actccatcaccaactaagttctctctttcaccaactaagagctacaagttttctcctaaa
actcctcctcagtgggcagaagatcacagatgtatacttcaaatgatctgtcagcaagtg
gaagctttaaagaatgaaatgcaagaaatgaaacttaataattccaacttgaatgcatcg
tctcatcggtggcctgctgaaacctatggaacagatacaatgtcagagggttatcagaga
gcacaaaatcttcatgaagctcccttaacagttgctaccactggcccatctgcttactac
agccagtcacctgcctataactctcagtatcttctcagaactgccgcaaccaatgtaaca
ccaacaaaggctcctgtctacggcatgaacagacttgcacctcagcaacatatatatgct
tatcaacaaccgatgcatacaccacctctgcaaaacgcttctgcttgtatgttttcccaa
gaaatatatggcacacctctgcgttttgattctcctgctactggactcatttctcctcgt
gcaggtgatgattactacaattacagtgttccacaggcaagcacaaatccaccattgcct
ggaccaggctatttcacaaagcgttcggtcacaccaccaactttaaagcctgcagaatca
aaagtgatagaatttccaaaatctaaaattggacagccaggaacagcagaaggatcaaaa
acatctctgccaacaccaacacagtcgagtcagccaacaacttttaaattcaatactaac
ttcaagtctaatgatggagactttaccttttcttctcttcaagttgcaacgcagcctgct
aatgcagcttttaatagcagtgaaagcctcttgggtcttctgacatctgataaaccttta
caggatgacagatacatcgaacaaaagccagttaatgatcacacaaatagtcaaagaaat
gtcttcaattttgccaataaacatgttccaggcatctcttttagagaaaccgtggaacaa
aatgcgcacaaaaacctgggttttgagaagagcgatatgtttactgtccaagaaccaagc
aagcctgtatttatgaattcaaatttggatttggccaacagaagtcatgaaacagaggga
ggaagcacccatggtggagatgaggatgatgatggtcctcactttgatcctgtggtgcca
ctccctgacaagattgaagtaaagacaggtgaggaagatgaagaagaattcttctgcaac
agagccaagctctttcgttttgatgcagaatctaaagaatggaaagaaaggggtattgga
aatgtgaaaatactgaaacataaagtatctggcaaatttcgtctcttaatgagacgggac
caagtgctgaaaatttgtgcaaatcactacataaatactgatatgaaattaactccaaat
gctggatcggataggtcatttgtatggcatgctttagattatgcagatgagttgccaaaa
ccagaacagcttgcaattagatttaaaacacctgaggaagcaatgcttttcagaagtaag
tttgaggaggcacagaatatcttaaaaaccttgggatcaaatgttgagacatctgtgact
cagagtagtgggactgcaggagaaacaacaactcaggacattaaggagcctagcagatcc
ttttctgggaccccgaactttggctttcagtttgcgaaagatggagtgagcagtgaatcc
aatagcaaaggcagccttacagctacatcgactgcatctggccctatgaccttttcattt
ggaaaggaagcgccactaatctgtccttctgatgagtgtgtgcagcatctcttgaagaag
gatcaatgggagtgtaaagtatgtttagttccaaatgaagcaactgcaaagaattgtgta
tcctgtcaaagtccaaatccagatatgtgggaaacacatggcaccccattaactgactct
gctgcaagtttcaaagccagtgatgacactgtgcaggacaaatttggatctgcttttgct
aaaaaagaaggtcaatgggactgcagtgtctgtttggtaagaaatgaacccactgcctcc
aggtgtgttgcctgccagaatccaaacaaaactaatacagtggtatctggtcaacaaact
tcctttaaacatggccaagctactgctccaaaggctgttcaaaatgacttgggaactgct
ttttctaaaaaagaaggtcagtgggagtgctctgtatgcctagtccaaaatgaagcaaaa
gatgtgaactgttgttcttgtcagaatcctaagtcacaaagtcaaccaaatgtgtctata
cctactgtacaggcatcccctgctcccaggtttggttccactgctgatgcaagtaagcca
cagaaaaatgggtttgaagggctttttactaaaaaggaagggcagtgggattgtagtatt
tgtcttgtgaggaatgaaggttcttcaccagcctgtgtggcctgccaaacaccaaatcca
tctggtaagcctgctggtgcttcttcatcaactcctacttctggcttgaaaagtaaatta
cctgaatctactgtaggaacaacagactttaagtgtgatttcttggaagagggctttaag
tttggccatgatgagcaaggcaagacaccatcatttacgtttcagattccttctgatact
gaagctaagtctgcaaaggaaggatttagcttttcgatgccagtgcctgcagctggattt
aaatttgggatacaggagtctagtaaaaataccactaagaaagacgagccatccaaagag
tatacaactggtggcttaaaaagcattgatgaaaaagacaaaaaggaactgccttcagat
agtggaattacattccaatttcaagaaacagcaaacaaggaaaaaggtgactgtgttttt
gggcaaaatagcagcacacttacttttgccgagcttgcaaaaagtactcctggggaaggc
tttcagttcggcaaaaaagaccctaacttcaaaggcttttcaggtacaggtgaaaagctg
ttttcttcgcaagattctaaaatggatcacaaagcaaacacatctgctgaccttggtgag
aaggatgatgatgtgtataagacagaggacagtgatgatatccattttgaacctatagtt
cagatgcctgaaaaagtagagccatttacaggagaggaagatgagaaagtgttatactcc
caaagagtaaagctgttcaggtttgatccagaaacaagccagtggaaagaacgtggggtg
ggcaacctgaagattcttaaaaatgaagttaatggcaaagtaagaatattgatgcggcgt
gagcaggtactgaaggtgtgtgcaaatcattggataacgacaacaatgaacttgaaacag
ctgtctggctcagacaaagcatggatgtggatggccaatgacttctctgatggtgatgca
aagttggaacatctggcagcaaaatttaagacaccagagcaggctgaggagttcaaacag
aagttcgaggaatgtcagaggctactactagatataccactgcagacaccccataaactt
gttgatacaggtaggacagctcaacttatacagaaagcagaagaaatgaagtgtggctta
aaagatctcaaaacctttctgacagatgacaaaacgaaactgtcagaagaggaaaatgtg
aactctgtttgtgccagcagtacttctgatctggttataaagccgcatgctgaaagtacc
gggcctactctggaatgggataactatgacttgcgtgaagaagcattggacgatagtgta
agtagttctgtatatgcatcacctcttgcaagtagtcctgtaaggaaaaatctgtttaga
tttggagagtctaccacaggttttagtttcagctttaaatctgccttgagcccatccaaa
tcccctgccaaacagaaccagagtagaacatcagtaggcacagatgaagattctgatgtt
actcaagaagaagagagagatggacagtactttgaacctgtggtacctctgcctgacctc
gtggaagtgaccagtggtgaggaaaatgagcaagttgtcttcagtcacagagctaagctc
tacagatatgacaaagatgctaatcagtggaaagagagaggtattggggatatcaagata
ctacagaactatgacaacaaacaagtccgtatagtaatgagaagagaccaggtactaaaa
ctctgtgccaatcatagaataacaccagatatgaatatgcaacaaatgaaaggatctgat
agagcatgggtatggactgcatgtgactttgcagatggggaaaggaaagtagagctgcta
gctgtgcgattcaagctgcaagatgttgcagactcatttaagcaaatttttgatgaagcg
aagcatgcccaagagagagacacactgataacacctctttcttctcgtgccaatacgccg
aaggaatctccgtgtggtaaaaatgctgtagctgtacttgaagaaactaccagagaaaga
actgacctcagccatggtgatgatacttctgatgtaactgtagaggtcgcagatgtgtca
aactcttctgaaacaccaacaaaaacagtggtttctcctccaaagtttgtattcggatct
gaatctgtcaagagcattttcagtaatgaaaagtcaaagacattcacatttggaaatact
tcagccactggttctctctttggcttcagctttaatcctccaagaaagagtgaagaccat
attccaatgtctcagaacacagcagagaaagaactggaagtctctgaaccaccaaaaagc
tctagcgttcctcagaagcctctagacagcaaggtagacaacttgcctacttcaatacaa
gatggaccctctaacttctcatttagaattctggaaaaagctgagaagacaacaatgtca
gaagatgatcttccatctgatgaggttataatagtttacgagttaacacctacccctgag
cagagggctcttgctggctttctcaagctaccttcaacattcttctgttacaagaataaa
cctggatatgtgagtgacgatgatgatgatgaagactatgaaacagctgttaagaaactt
aatggaagactgtatcccagcgattcagaagagaaaaagaaattgcaagatcttgtaaaa
gtaggcatgacagggaaaagtgaatttgacagtgaaagagaatgtgttactgcttgggaa
aagaaaccagctcctgaggagaaggataaagcagaagctctgcaggttccttctacatct
gtctgtggtgtcagcagtgatactgaggatgacagtccagaagactttcagacagaagtt
aaaattcaagaaacgaaagagaatgaggtcacaagctcaactgacttagtctgtaccagt
aaggaagaagtacctactccatcaactggtgaggtgacagtatttgtccagtcagctgcc
aacaatgaagaaccagattccaccacggaaactgtgcatgtatcacaggctttatcagga
gctgatgacaaacctgtagacttgtcaactaaaaaaagtgatttggactgttcagagtca
acacaagaaaacagaatcatctcatttggtttcggcaatactgcaggcttgtcatttgca
gatctggcttccaaaaactctggagactttgcttttggctcaaaagataaaaacttcaaa
tgggcgaatacaggagcagctgtgtttggagagacagcctgtaaagcagatgaagatgaa
ggtggtagtgatgatgaggtggtacatagtgatgatatccactttgagccaattgtgtcc
ttaccagaggtggaggtaaaatctggagaagaagatgaagaaattctcttcaaagagagg
gcaaaactttacagatgggacagagatgctgttcagtggaaggagcgtggtgttggagag
ataaagatcctcttccatacacagaagaaatactacagagtcctcatgagaagggaccaa
gttcttaaagtctgtgcaaaccacgtcatcaccaaagaaatgaacttggtgccctctgat
acatcaaacaatgctttaatttggacagccacagattatgctgatggtgaagtaaaagta
gaacaacttgcagtcagatttaaaagtcaagaaatggctaattctttcaagaggaggttt
gaagaatgccagctaagcttgtcagaactacagaagggacacttatctctggcagcagga
ctgtcaaaggacaccaaccccattgtgtattttgaagtttctgctgatgatgaaccttta
ggacacataaccatggagctgttttcaaatattgtccctcgaactgctgaaaatttcagg
gcgctgtgcacaggagagaaaggatttggattcaagaactccagctttcacagaatagtc
actgactttgtgtgtcagggaggtgatataactaaccatgatggaacaggtggacggtca
atttatggaacagcatttgaagatgagaattttgaagtgaaacacactggtcctggattg
ttgtcaatggcaaataagggcagggatacaaataattctcagttctttataacacttaaa
aaagcagaacacttggacttcaagcatgtggtatttgggtttgtgaaagatggaatggat
gttgtgaaaaagattgaatcctttggttctcctaaagggctagtaaatggaagaattgtc
attacagattgtgggcaaatataa
DBGET
integrated database retrieval system
