Ciconia boyciana (Oriental stork): 140646598
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Entry
140646598 CDS
T10948
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cboy Ciconia boyciana (Oriental stork)
Pathway
cboy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cboy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140646598 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cboy03021
]
140646598 (PCF11)
03019 Messenger RNA biogenesis [BR:
cboy03019
]
140646598 (PCF11)
Transcription machinery [BR:
cboy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140646598 (PCF11)
Messenger RNA biogenesis [BR:
cboy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
140646598 (PCF11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
140646598
NCBI-ProteinID:
XP_072706887
LinkDB
All DBs
Position
1
Genome browser
AA seq
1709 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVN
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIASVPAPSKQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRM
AQHSSHAKDQSHRKEFPPNTTSQSDTKANKTTQAEKQNSTKQEKLKASEKTQKKELDQSE
AKSKSPSPLKNKLPNTKDTKTQECESTKVSEISKRDPRLKRHLQDKSEGKEEEVKEKRRS
TEKKEKEEHKTCEHRPVGSRNKVINGAVQKQDTTTDESEKQGGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSN
KRNVKQEVRDPRRVKKVQEDRPQETASQHSTKASPDPKENAENWQGSKSGKRWKSGWEEN
KNSQQNEEHQALGKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANERLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHLPDALLSGIECEQAKAKRGVQFD
RKEPFGERSRRHSPVSGTNRPFADNLSPLESRRRLEEQNAAKGARGSKNFDPYDSWEESD
EFRDALRQQGKSTTEFQKIDGDAICRFDNREDRQLLGQAGVREEPRSPFSERFKRARYED
PEKAPFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRQAAARVGVDGQGSPFVDGPAAG
SSSRIDGPPGQAAMRFEGPLVGAGASQFDGPLAGAGAAGALRFDGPPGQLAGALRFEGPP
GQVGGGGPLRFDGPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPAGGLRFE
GPHGQPMGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFE
GPHGQPMGPHGPSGGGLRFEGPHGPSGGGLRLEGPHGPSGVGPRLIDGPVHQGAGGLRFD
GPLGRAGPRFDGCHAAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQ
RFDGPHQPASRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPSHGM
QFQRPDIFDGSPGPNFNGPAGPGAQNFPLRAAGHYFDEKGLQGPQYGNFNNMPMGSNQVS
LMSAQPGPYGQGQQYLPNPGSFVQNPAGALPHSYPDNHLGQLDVNELFAKLLSTGILKLS
KTDSTSAQVNETSSQPAAEEEDDDQNEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCY
SCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERA
KSQFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLK
NAIRVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPAENPLNIMLNIVKQETQESCDSPKVK
EEPDDTPTACAEESTPASTDIKTEPDESV
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggtagcagcgaggcccgggaggacgcgtgccgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctccctgttatgtaccttatggattccattgtc
aagaatgtgggaagagaatatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctactgcacctacctctgctgtcaat
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ttagagctggagctggaacagactaaagcacagttggctgtatctcttagtgttcagcaa
ggatcatctactatagcttcagttccagcaccttccaagcaacacatgtctcccacacct
catatgacagttaagccacctcatcagactgctgtgcaatccgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatatcaaaattgtaaatagggatcctcgacttaataggatg
gctcaacattcttctcatgctaaagatcaatctcatagaaaagaatttccaccgaacacg
accagtcagtctgataccaaggcaaacaaaacaacacaggctgaaaaacaaaactcaaca
aagcaagaaaaattgaaagcaagtgaaaaaacacagaagaaagaacttgaccagtcagaa
gcaaaatctaaatcaccatcccctttaaaaaataagctacccaatactaaagatactaaa
acccaggaatgtgaaagcacaaaagtatctgaaattagtaagcgggatccaagactgaaa
agacatcttcaagataagtcagagggcaaagaggaggaggtgaaagaaaagaggagaagt
acagagaaaaaagaaaaagaggaacataagacatgtgaacatagaccagtaggcagcaga
aataaagtaattaatggtgctgttcagaaacaagacacgactacagacgagtcagaaaaa
cagggtggaaaacaagggagatcaagtagtagaaaacggtcacgatcacgctctcctaag
gcacggtcaccatctacacattccccaaaaagacgagagaggagatcacctaaaagaaga
cttaggagtttatctccgacttcatctactcctaaaattgggaagatacgtcagataggc
cccaagcagtctcatgttgaagaaggcacacaagcagcaagagatgaaagaaattctaat
aagagaaatgttaaacaagaggtgcgagatccgaggagagtgaagaaagtccaagaagac
aggcctcaagaaacagcaagccagcattctacaaaagcatctcctgatccgaaggagaat
gcagaaaactggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaaat
aaaaactcacagcagaatgaagaacaccaagcacttggtaaatcccctcaccaaagacac
cgggaaaactggcctgctggtaaaggaattctatcaccccgagcaccaaagcagcagcac
cggttaagtgtggatgctaatttacagattcccaaagaactgacatctgcaagcaagaga
gaattacttaagaaggccaatgaacgcttaacatctggtgaaataacacaagatgagttc
cttatggtagctcatcagatcagacagctgttccagtatcaggaagggaagcacagatgt
aatgtctgggatagccctacagaggaaaaatgtggtttgaaaaagaaacctcttctatcg
gatgcagaattaacatattatgaacataaggctaaactaaaaagaactcaagttcagcat
tcattgtcaaggcttgatctgttggatcctgatgatattttggattatcatttgcctgat
gcattgctttctggaatagaatgtgagcaagcaaaagccaagcgtggagtacagtttgac
aggaaagaaccatttggagaaagatcgaggagacactctcctgtaagtggcactaataga
ccttttgctgataacctctcaccgcttgagagtcgacggagacttgaggaacaaaatgct
gctaaaggagcaagaggttctaagaactttgatccttacgacagctgggaagaatcagat
gaatttagagatgctctcaggcaacaggggaaaagcacaacagagtttcagaaaatagat
ggtgatgcaatctgcagatttgataatcgtgaagacagacagcttcttgggcaagctggt
gttcgagaggaaccaagatcaccattcagtgaacgtttcaaaagagctaggtatgaagat
ccagaaaaagcaccatttccggaaagtccaggatcaagatttggaggcattgaagcaaag
cagaggataagcgcactaatggaagacagacctctgtttgatggctcacctagacaggct
gctgcaagggttggggtagatggacaaggaagcccttttgttgatggtcctgccgctggt
tcaagttccagaattgatgggccacctggacaggctgctatgagatttgaggggcctttg
gtgggggcaggtgcatctcagtttgatggaccactggcaggagcaggggcagctggagcc
ctaagatttgatgggccaccagggcagctggcaggggccctgaggtttgaaggaccccca
ggacaggttggtggaggaggtccactgaggtttgacgggcctcttgggcagataggtggg
cctttgcggttcgaggggcctgcagggcagcctgtaggtggtcctagatttgaaggacct
ggagttggtctcaggtttgagggtccccgtggtcagcctgcaggtggtctcaggtttgag
ggacctcatggtcaacctatggggcctcgaggtcaaccagggggtggtctcaggtttgag
ggaccccatggtcagcccttggggcctcatggtcaaccagggggtggcctcaggtttgag
gggccacatttacagccattggggccccatggtcaacctggaggtggcctcagatttgag
gggccacatggtcagcctatggggccacatggaccatcaggtggtgggctcagatttgag
gggccacatggaccatcaggtggtggcctcagattggaaggaccacatggaccatcaggt
gtaggtcctaggttgattgatggaccagtacaccagggagctggtggacttagatttgat
ggtcctttgggtcgggccggtccaagattcgatggttgtcatgcagccggatttgatggt
cagcctggacagctgtctctcttgcaaagatttgatggaattcatggacagcctggtcca
agatttgaaagggcgcctggccaacaggcacaaccacgatttgatacagccatacctcaa
agatttgatggacctcaccagccagcctctagatttgacttgccccttggccttcaaggt
gcacgtttcgaaaatgtagctaaccatcctgcctcaagactagaaatgtcaccatatgga
caaggtggtccatttgttgaacatcctggccagggctacaatggaccatctcatgggatg
cagtttcagaggcctgatatatttgatggttcacctggaccaaatttcaatgggcccgct
ggcccaggagcacagaatttcccattgagagcagctggacattactttgatgaaaaaggt
cttcagggtcctcaatatgggaacttcaataatatgcctatgggaagtaatcaggtttct
ctcatgtctgctcaaccagggccttatggccaaggtcaacagtatttgccaaatcctgga
agttttgttcagaaccctgcaggagctcttccacattcatatcctgataaccaccttggt
cagcttgatgtcaatgaattgtttgctaaactgctgtcaacagggatcctcaaactgtca
aaaactgattccacttcagcacaagtgaatgaaacatcaagccagccagctgctgaagag
gaagatgatgaccagaatgaagatcaaaacgttccagacctcactaacttcacagttgaa
gaacttagacagcgttatgatagtgttataaatcgactgtacactggaattcagtgttac
tcatgtggaatgagattcactacttcacagacagatgtttatgcggatcatttagactgg
cattatcgtcagaaccggacagaaaaagatgttagcagaaaaattacacacagaagatgg
tactacagtttaacagactggattgaatttgaagaaatagccgatctagaggaacgtgca
aaaagccagttttttgaaaaagctcatgaagaggttgtgttgaagacacaagaagctgcg
aaagagaaggagtttcagagtgtccctgctggaccagctggagcggttgagagctgtgaa
atttgccaagagcaatttgaacagtattgggatgaggaagaggaagagtggcacctgaag
aatgctatcagagtagatgaaaagatttaccatccatcttgctatgaagattaccaaaac
acatcatcatttgattgcacaccatctcccagcaagactcctgcagaaaatccactaaat
ataatgttgaacattgttaagcaagaaacacaagagtcctgtgactcgcctaaagtcaaa
gaagaacctgatgacacccctactgcctgtgcagaagagagcacacctgcatctacagat
attaaaacagaacctgatgagtctgtttaa
DBGET
integrated database retrieval system
