Ciconia boyciana (Oriental stork): 140648625
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Entry
140648625 CDS
T10948
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cboy Ciconia boyciana (Oriental stork)
Pathway
cboy03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cboy00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
140648625 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cboy03021
]
140648625 (SMARCC1)
03036 Chromosome and associated proteins [BR:
cboy03036
]
140648625 (SMARCC1)
Transcription machinery [BR:
cboy03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
140648625 (SMARCC1)
Chromosome and associated proteins [BR:
cboy03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
140648625 (SMARCC1)
PBAF complex
140648625 (SMARCC1)
GBAF(ncBAF) complex
140648625 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
140648625
NCBI-ProteinID:
XP_072711025
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All DBs
Position
2:complement(168173651..168269517)
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AA seq
1133 aa
AA seq
DB search
MRGVRRVGGAGPRWRRSARVTMAAAVAAGGGTGPGAAAAAAVAVSGGPGLAALSVARRKD
GGPTGKFWESPETVSQLDSVRVWLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKH
VTNPAFTKLPAKCFMDFKAGGTLCHILGAAYKYKNEQGWRSTFPRHNRRRFDLQNPSRMD
RNVEMFMNIEKTLVQNNCLSRPTIYLIPDIELKLANKLKDIVKRHQGTVTEEKSKATHHV
YPSPTSTDDDEWLRPVMKKDKQVLVHWGFFPDSYDTWVHANEIDAEIEDPPIPEKPWKVH
AKWILDTDIFNEWMNEEDYEVDENRKSVSFRQRISMKNEEPVRSPERRDRKAAASTRKRK
HSPSPPPTPVESRKKTGKKGQAALYGKRRGQKEEDEQEDLTKDMEDPTPVPNIEEVVLPK
NVNPKKDSENTPVKGGTVADLDEQDEETVATGGKEDEDPNKGDQSRSIDPGEDNVTEQTN
HIIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLT
STACRRNLTGDVCAVMRVHAFLEQWGLINYQVDPESRPMAMGPPPTPHFNVLADTPSGLM
PLHIRTPQVPAAQQMLSFPEKNKEKPTDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQE
TLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVP
FSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARA
SGKVDPTYGLESSCIAGTGPDEPEKIDGAEEEKMETETDGQQSEKVENKAESEIEEGDKV
QEGENERNPEKEQDSEVTADTKPEEKEAEENKENVDASKDKENEAGKKKVEHEISEGNVA
TAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEA
LEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQHSQNPQQSHQHSSGPGMNPLGAPAHP
GLLSHQQPPPYPMMHHQMPPPHPPQPGQMPGPGSMIPGQPMPGRMMPSVSANIHPAGGGP
PPPGMSPISGNLIGPRVPLAAPNGMYPPPAQPPPPAEGVTPPPAGAPPASAAP
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcgtgaggcgggtgggaggcgcagggccgcggtggcggcgctcggcgagggta
acaatggcagcggcggtggcggcgggcggcgggacggggcccggagccgcggcggcggcg
gccgtggcggtgagcggcggccccgggttggcggcgctgtcggtggcgcggcggaaggac
ggcggccccacggggaagttctgggagagcccggagacggtgtcccagctcgactcggtc
cgcgtctggctggggaagcactacaagaagtatgttcaagcagatgctcctaccaataaa
acactggctgggctggtggtgcagctgctgcaattccaggaagatgcctttggaaaacac
gtcaccaatcctgccttcacaaagcttcctgcaaagtgcttcatggatttcaaagctgga
ggtacattatgtcacattcttggtgctgcttacaaatataagaatgaacagggctggaga
agtacctttcctcgtcataataggcggaggtttgacctgcagaatccatcccgaatggat
cgaaatgtggagatgttcatgaacattgagaaaacactagtgcagaacaattgtctgagc
agaccgaccatctacctcattccagatatagaattgaagctggctaataaattgaaggat
attgtcaaacgtcaccagggaacagtaactgaagagaagtcaaaggctacccaccatgtt
tatccaagtcctacctcaacggatgacgatgaatggttgagacctgtgatgaaaaaagac
aagcaggtgctggtacactggggcttttttccagacagctatgacacttgggttcatgcc
aatgaaatagatgctgaaattgaggatcctccaattcctgaaaagccgtggaaggttcat
gccaagtggattttggacacagatatattcaatgaatggatgaatgaagaggattatgag
gtagatgagaataggaaatcagtgagttttcgacagagaatctccatgaaaaatgaagag
cctgtacgtagtccggagaggagagacaggaaagcggcagcaagtacaaggaagagaaag
cattctccttctccaccccccactcctgtggagtcgagaaaaaagacagggaagaaagga
caagcagccttatatgggaaaaggagagggcagaaagaagaagatgagcaagaagatctt
acgaaggacatggaggatcccacaccagtacctaatatagaagaagtggtacttcccaaa
aatgtgaacccaaagaaagacagtgaaaacacgcctgtgaaaggaggaacagtagcagac
ctcgatgaacaggatgaggagacagtggcaactggaggaaaggaagatgaagatcctaac
aaaggggatcaaagtcggtcaattgatccaggtgaagataacgtcacagaacaaaccaac
cacatcattattccaagctatgcatcttggtttgactacaactgtattcatgtaattgaa
cgtcgtgctcttcctgaattcttcaatggaaaaaacaagtcgaagactccagaaatatac
ctggcttaccgcaacttcatgattgacacctatcgcttaaaccctcaagagtacttgacc
agcactgcctgcagaaggaatctgaccggagatgtgtgcgctgtcatgagagtacacgct
tttctggagcagtggggtctcattaactaccaagtggatccagaaagccgtcccatggcg
atgggacctccccctactcctcacttcaacgtgctggctgatacaccctctggactcatg
cctctccatatccgcactccgcaggttccagctgctcagcagatgttgagttttcctgag
aaaaacaaagagaagcctactgatctgcagaactttggacttcgcacagacatttactca
aaaaagactttagcaaagagtaaaggtgcaagtgctggaagagaatggacagaacaagag
acattgctgctattagaagctctggagatgtacaaagatgactggaacaaagtctccgag
catgtcgggagccgtacccaggatgagtgcattctccattttctgagacttccgatcgaa
gacccctatttggagaactctgatgcgtctctgggcccgctggcttaccagcccgtacct
ttcagccagtctggcaatccagtgatgagtactgttgcttttctggcgtcggtggtggat
ccccgggtggcatcagccgcagcaaaggctgcgttagaggagttttctcgagtcagagag
gaggtaccactggagctcgttgaagctcacgtaaagaaagtacaggaagcagcaagagcc
tctgggaaggtggatccaacgtacggactggagagcagctgcattgccggaacaggtcca
gatgagccggagaaaatcgatggagctgaagaagaaaagatggaaacagagacagatggg
caacagtctgagaaggttgaaaacaaagcagagagtgaaattgaggaaggcgataaagta
caagaaggagaaaatgagagaaatccagaaaaagagcaagacagcgaagtgactgcagac
accaagccagaagaaaaggaggcagaagagaacaaggagaacgttgatgcaagcaaagac
aaagaaaatgaggctgggaagaagaaagtggaacacgaaatctcggaaggaaacgtagct
acagctgcagctgctgcccttgcctcagctgccaccaaagcaaagcacctagcagcagtg
gaagaaagaaagatcaagtccctggtcgccctcctggtggaaacgcagatgaagaagctg
gagataaaacttcgccattttgaggagctggaaaccattatggacagagagaaagaggca
ttagagcaacagagacaacagttgctgacagaacgccagaattttcacatggaacagcta
aaatacgctgaattaagggctcgtcagcaaatggagcagcagcacagtcaaaacccgcag
cagtctcaccagcactccagtgggcctgggatgaacccccttggggcaccagcacatcca
ggtttactgtctcatcagcagcccccgccgtaccctatgatgcaccaccaaatgccacca
cctcacccaccgcagccaggtcagatgccggggcccggttcgatgatacctggacagccc
atgccgggccggatgatgccaagtgtgtcagccaacatccatccagccggcggtggtccc
cccccacctggcatgtcaccgatatcaggaaacctaattggacctcgtgttcctctagca
gctccaaatggcatgtatccccctcctgcacagccgcctccgccagcggaaggggtgacc
ccacctccggccggagccccgccggcctcagccgctccgtaa
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