Ciconia boyciana (Oriental stork): 140650645
Help
Entry
140650645 CDS
T10948
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cboy Ciconia boyciana (Oriental stork)
Pathway
cboy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cboy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140650645 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cboy03019
]
140650645 (MTREX)
03041 Spliceosome [BR:
cboy03041
]
140650645 (MTREX)
03009 Ribosome biogenesis [BR:
cboy03009
]
140650645 (MTREX)
03016 Transfer RNA biogenesis [BR:
cboy03016
]
140650645 (MTREX)
Enzymes [BR:
cboy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140650645 (MTREX)
Messenger RNA biogenesis [BR:
cboy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
140650645 (MTREX)
Spliceosome [BR:
cboy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140650645 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
140650645 (MTREX)
Ribosome biogenesis [BR:
cboy03009
]
Eukaryotic type
Pre-60S particles
Helicases
140650645 (MTREX)
Transfer RNA biogenesis [BR:
cboy03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
140650645 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
140650645
NCBI-ProteinID:
XP_072715355
LinkDB
All DBs
Position
4:36236409..36284574
Genome browser
AA seq
1034 aa
AA seq
DB search
MADAFGDELFSVFEEDSAAAASGAKKSKVGATEGARRPGKRSEEKSSVAATGKPKREVEV
NSTEDAVLGKKPKLEDVVSEDANLADLMPQVKVQAVETVEGCTHEVALPADEDFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGM
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EGQYNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEGDD
FGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQV
VPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIATDIKTAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgtttggggacgagctcttcagcgtgtttgaggaggactcggccgccgcc
gcctccggcgccaagaagagcaaagtgggcgccaccgagggtgccaggagaccaggaaaa
cgatcggaggaaaaatcttcagtagctgcaacagggaagcccaaaagggaagttgaggtc
aatagtactgaagatgctgttttgggcaagaagccaaaattggaagatgttgtatcagaa
gatgctaatctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaactgttgaa
ggttgtacacatgaggttgcacttccagcagatgaagacttcacaggcctgaagccaaga
actggaaaagctgcaaaagaatatccgtttattcttgatgcctttcagagagaagctatt
ctttgtgtagataataaccagtctgtgttagtgtcagctcatacatcagctggtaaaact
gtttgtgcagagtatgcaattgccctggctttgagggagaaacagcgtgtgatatttaca
agtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaatcctacagcttcttgtctggtaatgaca
accgagattttgagaagtatgctttaccgaggttctgaggttatgcgagaagttgcatgg
gttatttttgatgaaatccactacatgagagattcagaacgtggtgtggtttgggaagag
acaattattttgctccctgacaatgttcattatgtgttcctttctgcaactattccaaat
gcccgtcagtttgctgaatggatctgccatcttcacaaacaaccttgccacgtgatttac
actgactatcgacccactccactgcagcattatatattcccagcaggaggagatggactc
catctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatgcaa
gtgcttagagatgcaggagacttagcaaaaggggaccagaagggcaggaaaggaggaatg
aaaggtccttcgaatgtttttaagattgtgaagatgataatggaaaggaatttccaacct
gtgattattttcagcttcagtaagaaagactgcgaagcctacgcacttcagatgacaaag
ttagattttaatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgcaatt
gattgtttgtcagatgaagacaaaaagcttcctcaggttgagcatgtacttcctcttctg
aagcgaggaattggtatccatcacagtggcctgcttcctatcttgaaagaaaccatagaa
attcttttctctgagggcctaataaaggccttatttgcaacagagacttttgctatggga
attaatatgccagccaggactgtgctatttacaagtgccagcaaattcgatggaaaagat
ttccgatggatatcatcaggtgaatacattcaaatgtcaggtcgtgcaggtcgccgaggt
atggatgacagaggaatagtaatccttatggtggatgaaaaaatgagtccaacaattggc
aagcagcttttgaagggttcagctgatcctttaaacagtgcattccacctgacgtacaac
atggtattaaacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaaatcc
ttctatcagttccaacattacagaactattccagaaatagtagaaagagtgaataatttg
gaaggacagtacaacaaaatagcaattcccaatgaagaaaatgtggtcatatactacaaa
atccgacagcagcttgcaaaactgggtaaagagattgaagaatatgttcacaaaccaaag
tattgcttgccctttctacagccgggaagactggtaaaggtgaagaacgaaggtgatgac
tttggatggggagtggttgttaatttctctaagaaatcgaatgttaagccaaattctggt
gaactggacccattatacgtagttgaagtgctactgcactgcagcaaagagagtttgaaa
aactctgctactgaggctgcaaagccagccagacctgatgagaaaggagagatgcaggtt
gttcctgttttggtacatcttctctcagctatcagcagtgtccgactttacataccgaaa
gacctgaggcctattgacaacaggcaaagtgtgttaaaatctatacaagaagtacagaag
cgatttcccgatggagtaccattactagaccctatcgatgacatgggtatcaaagatcaa
ggactgaaaaaagtaatccaaaaagtagaggcatttgagcataggatgtattcacatcct
cttcacaatgatcctaacttggaaactgtatacaaactttgtgaaaaaaaagcacagatt
gctacggatattaaaacagcaaagcgagaactgaaaaaagccagaactgtcttacagatg
gatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacatcttcggat
gttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactcctg
acagaaatgatgttcaatggtctcttcaatgacttatctgcagaacaggcaactgcacta
ctaagctgttttgtatttcaagagaattccagtgaaatgccaaaattgacagagcagttg
gcaggaccacttcggcaaatgcaggagtgcgcaaaaagaattgccaaggtgtcagcagaa
gcaaaactggaaatcgatgaagaaaattacttaaattctttcagacccaacctaatggat
gttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgactgatgtc
tttgaaggtagcataattcgttgcatgaggaggctagaagaattgcttcggcagatgtgc
caggctgcaaaagccattggaaacacagagttggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
DBGET
integrated database retrieval system
