Ciconia boyciana (Oriental stork): 140655012
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Entry
140655012 CDS
T10948
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cboy Ciconia boyciana (Oriental stork)
Brite
KEGG Orthology (KO) [BR:
cboy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cboy03000
]
140655012 (RC3H1)
04121 Ubiquitin system [BR:
cboy04121
]
140655012 (RC3H1)
Transcription factors [BR:
cboy03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
140655012 (RC3H1)
Ubiquitin system [BR:
cboy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
140655012 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
140655012
NCBI-ProteinID:
XP_072725146
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All DBs
Position
7:32864837..32933100
Genome browser
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSGYENTLKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARAPTDLPSVSVTKQLQMVPRGSQLYNTQQADMFYQDPRGA
APPFEPAPYQQGVYYPTQSMSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVSPQYTQPQQY
PPMGQPIYPPHYDSRRVYPPVQPYQREEIVRGSPVPIEIPQAAVPSYVPESRDRYQQTEG
YCPVAPHISQIRPSCHRPHPSLDELHRRRNEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EIFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANV
DSKAMRDQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQG
ATTKSIISDYNPYGTHGGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAERE
QQLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQ
LSLELHQVEREIGKRTRELSMESQSSLDIKNKLGTTKQTENGQLESQSKVPAEDLALTFS
SDVPNGSALTQENIGLLSNKTASLSLSEDPEGGGDNHDSQRAGVTPTSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccgatttgcacacagact
ttcgacgaaacaatccggaagcccatcagcttgggttgcggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgcccttttgaccagaccactatcaatacggac
attgaactccttcctgtgaactcagccttgctgcaactagtgggtgctcaggttcctgag
cagcagccaattactttatgtagtggagctgaagataccaagcattatgaggagggcaag
aaatgtgtggaagaattagcattgtaccttaaaccactcagcagcgcaagaggtgtgggt
cttaacagtactactcagagcgtgctaagtcgtcccatgcaaaggaaacttgtgacatta
gttcattgccagctagtggaggaagaagggcggatcagagccatgcgtgcagcacggtca
ctgggtgaaagaacagtcacagagctcattcttcagcatcaaaatcctcaacagctctct
tccaacctctgggctgcagtgagagccagagggtgccaattccttggaccagcaatgcaa
gaggaggctttaaagctggttctactggctctggaagatggatctgctttgtcacgaaag
gtcttggttctctttgtggttcagagactggagccgcgatttcctcaggcttctaaaact
agcattgggcatgttgtccagcttctttacagagcctcgtgcttcaaggtgacaaagcga
gatgaagattcctccctgatgcaactgaaggaggaatttcggacgtatgaagctctgaga
agggaacacgattcccagatagttcaaattgctatggaagcaggtttacgcattgcacca
gatcagtggtcctcactgttatacggagaccagtctcacaaatcccacatgcagtctatc
attgacaagttgcagaccccagcctcttttgcacagagtgttcaggagttaactattgct
cttcagaggactggagatccagctaacctgaatcgtcttcgacctcacctagagctcctg
gcaaatattgatcccagtccagatgctccacctccaacatgggaacaactggaaaatgga
cttgttgctgtgaggactgtggttcatggcttagttgattatatccagaatcacagcaag
aaaggaacagatcagcaacagcctcctcagcacagcaagtacaagacatatatgtgccga
gacatgaaacagagaggaggatgcccccgaggggccagctgcacctttgcacattcacag
gaggagctagaaaaattccgtaaaatgaacaagcgtctggttcccagaagacccctgagt
gcctccctgggccagctaaatgaggtgggcctgccttcaggagctatcctctcagaggaa
gggggagtggacttgcccaataggaaaacttctgctctgccaaatggaattgtgtcaaca
ggcagcacagtgacgcaactgatttcccgagggactgactccggttacgaaaatactctg
aagccagggaagatggaccacctgagtagcagtgcccctggatcccctcctgacttgctg
gaatctgtcccgaagagctctatttctgccttaccagtgaaccctcatcctgtgcccgct
cgggcaccaacagatctgccttcagtgtctgtcaccaagcagttgcagatggtaccacga
gggtctcagttgtataatactcagcaagcagatatgttttatcaagatcctagaggagct
gccccaccatttgagccagcgccctaccagcaaggagtttactatcccactcagtccatg
tctcgctttgtccgacctcctccatcagctcctgaacctggtccgccttatttagaccat
tacccaccctaccttcaggatcgtgtggtgagcccacagtacacgcagccacagcagtat
cctcctatggggcaacctatatacccaccacactacgacagtcgtcgtgtatatccacct
gtccagccatatcagcgagaggagattgtccgaggaagccctgtacccattgaaattcca
caagcagctgtaccttcctacgtacctgaatccagagacagataccagcaaacagagggt
tattgcccagtggctccacatatcagtcagataagaccttcatgccacaggccgcatccc
agcctggatgaacttcaccgacgaaggaatgagatcatggcccagctagaagagaggaag
gtgatttctccacctccttttgcaccgtcaccaaccttgcctcatccttttcattcggag
gagatttttgtgtttgtacagtacttggatgaagacctgaaggtagctgggaaatacaaa
ggaaatgactatagccagtactctccctggtcctgtgacaccatcggctcctacattgga
accaaagatgcaaaacccaaagatgttgtggcagcaaggagtgtggagatggcgaatgta
gatagtaaagccatgcgtgaccagcgattagacatgcagcgacgagcagcagagactggt
gatgatgacctcattccatttggagaccgaccaactgtgtcgagatttggggctatctct
cgtacttccaaagcgatgtaccagaattctggtcccatgcaggccatggcggttcaggga
gctaccaccaaatcaatcatttcagactacaatccttatggaactcatggtggctgggga
ggctctccatattctcctcatcaaaatataccttctcagggacgtttcaatgacagggag
agactgtccatgtcagatgtggctggtcatgggaaacagttgccctcagcggagcgagag
cagcagctgcgcatggagctgcagcaagtagaccatcagattagccagcagacacaaatg
cgaggactagaggctgttagtaacaggctgctgttgcagagggaggcgactaccctggca
ggccaaccacagcccccacccccacctcccaagtggcctgggatgatctcaagtgaacag
ctgagcttggagctacaccaggtggaaagggaaattgggaagagaacccgtgagctgagc
atggagagccagtcttcactggatataaaaaacaaactgggcaccactaaacagacggaa
aatggacagttagaatcgcaaagcaaggttccagctgaggaccttgcactgacattcagc
agtgatgttccgaacggatcagccttgacacaagagaacattggcctcctgtcaaacaag
acggcatctctcagcctgtcagaggacccagagggaggaggagacaaccacgactcccag
agagcgggagttacgcccacgtctgctccatga
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integrated database retrieval system
