Ciconia boyciana (Oriental stork): 140660880
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Entry
140660880 CDS
T10948
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
cboy Ciconia boyciana (Oriental stork)
Pathway
cboy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cboy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
140660880 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cboy03400
]
140660880 (LIG3)
Enzymes [BR:
cboy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
140660880 (LIG3)
DNA repair and recombination proteins [BR:
cboy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
140660880 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
aRib
Motif
Other DBs
NCBI-GeneID:
140660880
NCBI-ProteinID:
XP_072738341
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All DBs
Position
17:complement(5725834..5741673)
Genome browser
AA seq
994 aa
AA seq
DB search
MPAGSRTLSQAARALGRGTGLLSPHTQVSLPRLYLCCVGLPGASPNYWYQLLLRSVSFQS
AGRNEGGGAGAFRFSLLLHTWLRQACTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGV
VRIGKIVPNPFTESGGDMKEWYHVKCMFEKLEKARATTKKIEDITDLEGWEELQDGEKEL
INKHISEANSKAASTPKKKVIVQAKLTATGQITTKDPLALISPSPKKFSGFTAKPKNSED
VSANSSHKASLSAKKCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLKKGSGGDG
FHGDVYLTIKLLLPGVIKIVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETIRLFF
EQSKSCPPAAKSLLTIQEVDEFLIQLSKLTKEDDQQSVLQHITRRCTGNDLKCIIRLIKH
DLKMNAGAKHVLDALDPNAYEAFKASRNLQDVVERVLKNQQEAEKMPGLKRTLSVEASLM
TPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKV
AHFKDFIPQAFPGGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDISLMDRPLCERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLV
LKDIKGNYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
KSEKWCTVTKCSGGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKK
APVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWKTATNLQQLKELYQLSKEKADF
SVVAGEEDESTAGSSGENEGNSRSSTPHSAIKTPPSKSPAKAQKPEESKPVIGSPQKSEE
KRGEKRKASEMDDNGKKTLLDIFTGVKLYLSPSVKDFDKIRRYFIAYDGDLVPEFDTASA
THVIGDIDENPDAKRVSPNWIWECIRKRRLVAPC
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcaggcagcaggacactatcacaggctgcccgggcactcggcaggggcacagga
cttctctccccccatacacaggtctccttgccaagactctacctttgttgtgttggcctc
cccggggccagccccaattactggtaccaactgctgttaaggagtgtatctttccagtcc
gcaggcagaaacgagggtggtggtgctggggctttccgtttctccctgcttttgcacact
tggcttcgccaagcctgcacagctgcagaggacatggcagagcagaggtattgcgtagac
tatgccaagcgtggcacggcaggctgtaaaaagtgcaaggagaagattgtgaaaggagtg
gtgcgcattggaaagattgttcctaatcctttcacggagtctggcggggacatgaaggag
tggtaccatgtgaagtgcatgtttgagaagctagagaaggcccgggccaccaccaagaaa
attgaagacatcacagacttggaagggtgggaagagctacaagatggggagaaagaatta
atcaacaagcacatctcagaagctaattccaaggctgcaagtacaccgaagaaaaaagtg
atagttcaagctaagctcactgccacaggacaaataactacaaaagatccattagctctt
atcagtccatcgccaaagaagttctctggcttcacagccaagccaaagaattcagaagat
gtctctgcaaactcttcccacaaggctagcctatctgcaaaaaaatgtgatccgaagcac
aaagactgcttgctgcgagagttcaggaagctctgtgcgatggttgctgaaaagcctagc
tataatgtgaaaacacagatcatccaggactttctgaagaagggatctggaggagatggt
tttcatggtgatgtatacctgaccattaagctgctgttaccaggcgtcattaaaattgtt
tacaacttgaacgataagcagattgtaaagctgtttagtaggatttttaactgcagccaa
gaagaaatggtccgggacctggaacagggagatgtttccgagaccatacgcctcttcttt
gaacagagcaagtcttgtcctccagcagccaaaagtctcctgaccatccaagaggtagat
gaattcctaatccagctatcaaagcttactaaggaagacgaccagcaaagtgtgctgcaa
catatcactcgcagatgtacgggcaatgacctgaaatgcatcatcaggctaattaagcat
gacttgaaaatgaacgctggagcaaagcatgtgttggatgctttggatcccaatgcttat
gaggcgttcaaagcgtcacgcaacctccaggatgtggtagagcgagtcctgaagaaccag
caggaggctgagaagatgccaggtctgaagcgaaccctcagtgtggaggcctctctgatg
accccggttcagcccatgctggctgaagcctgcaagtcaattgagtatgccatgaagaag
tgcccaaatggcatgtatgcagagatcaaatacgatggcgagcgggtgcaggtccataaa
aatggagatcatttcagctacttcagcagaagcctcaaacctgtcctccctcacaaagta
gcccattttaaggacttcatcccccaggctttccctggtgggcaaagtatgatcctggat
tcggaagttcttctgattgataacaaaactggcaagccacttccttttgggactcttggt
gtgcacaagaaagctgctttccaagatgccaatgtttgcttgtttgtgtttgactgcatc
tatttcaatgacatcagcctgatggacaggcctctgtgtgaacgtcgtaagtttctccat
gataacatggttgaaatccccaaccggatcctcttctcggagatgaagcatgtcacaaaa
gcttcagatctggcagatatgatcacccgagtcatccgtgagggactggaaggactggtg
ttgaaagatataaagggtaattatgaaccaggaaaacgacactggctgaaagtgaaaaag
gactacctaaatgagggtgcaatggctgacacagcggacctggtggtgctgggagctttc
tatggacaaggcagtaaaggtgggatgatgtccatcttcctcatgggctgctatgatccc
aagagtgagaagtggtgcactgtgaccaagtgttctggtggccatgatgatgctaccttg
gcgcgtctgcaaacagagctggatatggtgaagatcagcaaggatcctagtaaaattcca
aggtggctgaaaattaacaaaatctactacccagacttcattgtcccagatccgaagaaa
gccccagtgtgggagatcacaggggctgagttctctaaagctgaagcccacactgcagat
gggatctccattcgcttccctcgctgcacccgcattcgagatgacaaagactggaagaca
gccaccaacctccagcagcttaaggagctgtaccaactctccaaagagaaggctgatttc
agtgttgttgctggggaggaagatgagtccacggctggcagcagtggagagaatgaggga
aattccaggtcctccacaccacacagcgctattaaaacccccccgagcaagtcacctgca
aaagcccagaagccagaagaaagcaaaccagtcattggatcccctcaaaaatcagaggag
aaacgaggggagaagcgaaaagcatctgagatggacgacaatggaaaaaagacactgctg
gacatattcactggtgtgaagctctacctatcgccctctgtgaaggactttgacaagatc
cggcggtactttatagcatacgatggggatcttgtgccggagtttgacacggcctcagca
acacatgttataggggacattgatgagaatcctgatgctaagcgtgtgtctcccaactgg
atctgggaatgcatccggaaacggagactggtagccccatgctag
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