Ciconia boyciana (Oriental stork): 140662283
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Entry
140662283 CDS
T10948
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cboy
Ciconia boyciana (Oriental stork)
Pathway
cboy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cboy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140662283 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cboy03041
]
140662283 (DDX42)
Enzymes [BR:
cboy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140662283 (DDX42)
Spliceosome [BR:
cboy03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
140662283 (DDX42)
Complex B
140662283 (DDX42)
Complex C
U2 SnRNP specific factors
140662283 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
140662283
NCBI-ProteinID:
XP_072741639
LinkDB
All DBs
Position
22:complement(3835765..3857851)
Genome browser
AA seq
1045 aa
AA seq
DB search
MLWQALHEPHAADLPSQEQPIHPPISTQARGKGERRAPAGLAPTVTHQPKAGTPTAGAAR
VPPCRGSPSLQAHASAPSSFQGQKSRYIEDIMNWNKGGPGTKRGFGFGGFAITPGKKEEP
KLSQQSHSAFGTAGSSAAFAKSGPPQLPSFYKIGSKRANFDEENAYFEDEEEDSSNVELP
YIPAENSPTRQQFHSKSADSDSDDDPLEAFMAEVEDQAARDMKRLEDKDKEKKNVKGIRD
DIEEEDDQEAYFRYMAENPTAGVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIE
YPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIR
KSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIA
VIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID
HVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA
RDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA
NAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKT
VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL
DLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENSDRGNNNSVMSNYEAYKPS
TGAMGDRLTAMKAAFQSQYKSHFVAASLNNQKTGSSAAGASGWTSAGSLNSVPTSSAQQN
AANPDSPIAAAAAAKGVPGFTSTGNLSSVPTFPSVGVQGFNNTNASTNSREGIGGGSSTS
VAAAGGGGGSGGGSGGSGGVGGGGIVRERYNDNRNSRHNEVPRRGEGGGRYNDVQRHGEG
GGRHSDAYRHGEGRHGDNHRHGESRHFADVGSGNRNNGDSRNSNEGRNNENRNGENRKDA
NSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgctttggcaggccctccacgagccacatgccgccgacctgccctcgcaagagcagccg
attcatccaccgatctccacacaggcgagagggaagggagagcgccgggccccagcaggt
ctggcccccaccgtgacccaccagcctaaagcagggacacccaccgcgggtgctgctcgc
gtcccgccctgccgtggatccccctcgctccaggcacacgcctccgctcccagctccttc
cagggacagaagtcaagatatattgaggacatcatgaattggaataaaggtggacctggt
actaagagaggctttggttttggtggatttgccataacacctggaaaaaaagaggagcct
aagctctctcaacagtctcatagtgcttttggaacagccggttcttctgctgcatttgcg
aaatcgggacctcctcagctgccttctttctacaaaattgggtcaaagcgagcaaatttt
gatgaagagaatgcgtactttgaggatgaagaggaagattccagcaatgtcgaattgcca
tacattccagcagagaattcacccactcgccagcagtttcattccaaatcagcagactct
gacagcgatgatgatcctctggaggcattcatggctgaagtggaggatcaagctgctcga
gacatgaagagacttgaagataaagacaaagaaaaaaagaatgttaagggtattcgagat
gacattgaagaggaagatgaccaagaagcttattttcgctacatggctgaaaaccccact
gctggtgtggtccaagaagaggaagaggataacctggagtatgatagtgacgggaatcca
attgcaccatccaaaaaaatcattgatcctcttccacctattgaccattcagagatcgaa
tatccaccatttgagaaaaatttctatgatgagcatgaggagatcaccagtctcaccccg
cagcaagtggtggaattacgtcataagctaaatctccgggtttccggtgctgctcctccg
aggcctggcagtagttttgctcattttgggtttgatgagcaacttatgcatcaaattagg
aaatctgagtatacccagcccactcctatacaatgtcagggtgttccagttgcactaagt
ggcagagatatgattgggatagctaagactggaagcggaaaaacggcagccttcatctgg
ccgatgttgattcacatcatggatcaaaaggagcttgaaccgggggatggtcccattgca
gtgatcgtatgcccgaccagagagctttgccaacagatccattctgaatgtaagcgcttt
ggtaaggcatataatctgcgctctgtagctgtgtatggaggaggaagcatgtgggagcaa
gccaaagccctccaggagggggcagagatagttgtctgcacaccaggtcgtttaattgat
catgtgaaaaagaaagctacaaaccttcagagagtcacttaccttgtgtttgatgaagct
gacagaatgtttgatatgggttttgaatatcaggtcaggtcaattgcaagccacgtacgt
cctgacagacagaccctcttgttcagtgccactttccgtaagaagattgagaagttggct
cgagatattctgatcgacccaattcgagttgtgcagggagacattggagaggcaaatgaa
gatgttactcaaattgtggagattttcccctctggccctagcaaatggaactggctgact
cgacgcctcgtagagttcacatcttctgggagcgttctcctctttgtcaccaagaaggca
aatgcagaagagctggccaataaccttaagcaagaggatcataatctggggttgcttcat
ggtgacatggaccagagtgagaggaataaagtcatttcagaatttaagaaaaaggggatc
ccgatactggtagctactgatgtggcagcccgtgggttagatattccatccattaagact
gtgatcaattacgatgtggctcgggacatagatacgcacacccatagaatcggtcgtact
ggcagagcaggcgagaagggagttgcctacactctgctgactcccaaagacagtaacttc
gctggtgatcttgtcagaaatctggaaggcgctaatcaacatgtttccaaagagctgttg
gatctagcaatgcagaatccgtggttccggaaatcgcgtttcaaaggaggaaaaggcaag
aagctgaatattggtggtggtggcttaggataccgtgaacgtcctggtctgggatcagaa
aattctgaccggggaaacaacaacagcgtgatgagtaactatgaggcatacaagccatcc
actggggcaatgggagacagacttacggcaatgaaagccgcttttcagtcccagtataag
agccactttgttgctgcaagcttaaataatcaaaagactggtagctccgctgctggtgct
agtggctggaccagcgctgggagcttgaactcggtaccaacgagttcagcacagcaaaat
gctgcaaatcctgacagcccaattgcagccgccgcagcagcaaagggtgttccaggtttc
accagcacggggaatttgagtagcgttcccacctttccaagtgtcggagtacagggcttc
aacaacacaaatgccagcaccaacagtcgagaaggcatcggcggcggcagcagcaccagc
gttgctgctgctggtggcggtggtggcagcggtggtggcagcggcggcagcggtggtgtt
ggtggtggcggcattgtcagagaacgatacaacgacaaccggaacagtcgccacaatgag
gtcccgcgccgtggagagggtggtggtcgctacaatgatgtgcaacgccatggagaagga
ggcggtcgccacagtgacgcttaccgccacggagagggccgacatggcgacaaccatcgc
cacggtgaaagccggcacttcgctgatgtgggcagtggcaatcgcaataatggtgatagc
aggaatagcaacgaaggtaggaacaacgaaaacaggaatggtgagaacaggaaggatgcc
aacagccgagacaacaagacagatggttttgctgtcccagagcccccaaaacgtaagaag
agccggtgggacagttaa
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integrated database retrieval system
