Chryseobacterium balustinum: EB354_18725
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Entry
EB354_18725 CDS
T07847
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cbp
Chryseobacterium balustinum
Pathway
cbp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EB354_18725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbp03021
]
EB354_18725
03019 Messenger RNA biogenesis [BR:
cbp03019
]
EB354_18725
Transcription machinery [BR:
cbp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EB354_18725
Messenger RNA biogenesis [BR:
cbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EB354_18725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
Rho_N
AAA
S1CSD-TOTE-2
PAT1
Motif
Other DBs
NCBI-ProteinID:
AZB31129
UniProt:
A0AAX2II74
LinkDB
All DBs
Position
complement(4041778..4043673)
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AA seq
631 aa
AA seq
DB search
MFNIETLRSKSVTELTKILKDLGVKVARTSNENDKIFAILDFQASNPKVTKDYFNTTETP
TAVTEEQPVEKVVKPAPKKAAPKKAVKPKVEIATEPKETPPAKTPEVIEIPEATKAEEVP
AEEVKAEAPKNTPEEKPSSSNNRQKRKRVTPPPASNSEIEAQGTIELPLNIDSQPSAPAQ
AKEERPKRPQQGQSQQNQKGQNHPQQNSGNPHNRNQNNNQNQNSNQNNPNQNQNPNQNRQ
QHAERPERHEEQHEQKKEFSFDGMVSIEGVLEILPDNYGFLRSSDFSYISSPDDVYVSTA
QIRNFGLKTGDTVRGIVRLPKEGEKYFSLLKPTEVNGRDLAYIKDRVAFEYLTPLFPEEK
FNLSGDNSTMSTRIVDLFAPIGKGQRAMIVAQPKTGKTMLLKDIANSIAANHPEVYMMVL
LIDERPEEVTDMERSVNAEVIASTFDEAADKHVKVANLVLAKAQRMVECGHDVVILLDSI
TRLARAYNTVTPASGKVLSGGVDANALHKPKRFFGAARKIENGGSLTIVATALIDTGSKM
DEVIFEEFKGTGNMELQLDRKIANRRIYPAIDLISSSTRRDDLLLDEVTSQRMWIFRKYL
SEMNPIEAMEFVSKNIRGTLNNEEFLMSMNR
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacatagaaacgttaaggtcaaaatctgtaacggaattgactaaaatcttaaaa
gatttgggcgttaaggttgcaagaaccagcaatgaaaatgataaaatttttgctattcta
gattttcaggcttccaaccctaaagttacaaaagattacttcaataccacagaaacacca
actgctgttacagaggaacagccagtggaaaaggtggtaaaaccagctcctaaaaaagct
gctcccaaaaaagctgtaaaacctaaagtggaaatagcaacggagccaaaagaaactccg
cctgcaaaaacaccggaagttattgaaataccggaagcgaccaaagctgaagaagtacca
gcagaagaggtaaaagctgaagctccgaaaaatacaccagaagaaaaacctagttcttcc
aacaacagacaaaaaagaaaaagagttacgcctcctcctgcatcgaatagtgaaattgaa
gcgcagggaacgatagaacttcctttaaatatagattctcagccaagtgcacctgcacag
gcaaaagaggagagacctaaaagaccacaacaaggtcagtcacaacaaaatcaaaaaggt
caaaaccatccacagcaaaacagtggaaatcctcataatagaaatcagaacaataaccaa
aatcagaattctaatcaaaacaaccctaatcaaaaccaaaatcctaatcagaacagacag
caacatgccgaaagacctgagagacacgaggagcagcacgaacagaaaaaagagttcagc
ttcgatggaatggttagtattgaaggagttttagagattttaccagataactacggattt
ttacgttcatcagacttttcttatatttcttcaccggatgacgtgtatgtttcgacagca
caaatcagaaattttggtttaaaaaccggagataccgtaagaggaattgtaagacttccg
aaagaaggcgaaaaatatttctcattactaaagccaactgaagtaaacggtcgcgattta
gcatatattaaagaccgtgttgcttttgaatatcttacaccgttattccctgaagagaaa
tttaacctatctggagataattctacgatgtcaacaagaatcgtagatttatttgcacca
atcggaaaaggacagagagcaatgattgttgctcagccgaaaaccggtaaaacgatgttg
ttgaaagatattgctaattctatcgcagccaaccaccccgaagtttatatgatggtactt
ttaatagacgaacgtcctgaagaagttaccgatatggaaagaagtgtgaatgcagaagta
attgcttctacatttgatgaagctgcagataaacacgtaaaagtggctaacttagtttta
gcgaaagctcagagaatggtagagtgcggtcatgatgtggtgattcttttagattcaatt
acaaggttggcaagagcttataatactgtaactcctgcttctggaaaagtactttctggt
ggtgtagatgcaaatgcacttcataagccaaaaagattcttcggagctgcaagaaaaatt
gaaaacggagggtcgctaaccatagttgcaaccgctttaattgatacaggttctaaaatg
gatgaagttatttttgaagaattcaaaggtaccggaaacatggagcttcaattagacaga
aaaattgccaacagaagaatttatccggccatcgatttgatttcttcaagtacaagaaga
gatgatttgttgcttgacgaggtaacttcacaaagaatgtggattttcagaaagtatctt
tcagaaatgaatcctatcgaagcaatggaatttgtcagcaaaaacatcagaggaacttta
aataatgaagagttcttgatgtcgatgaacagataa
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