Lawsonella clevelandensis: AL705_03085
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Entry
AL705_03085 CDS
T04080
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cbq
Lawsonella clevelandensis
Pathway
cbq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AL705_03085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbq03021
]
AL705_03085
03400 DNA repair and recombination proteins [BR:
cbq03400
]
AL705_03085
Enzymes [BR:
cbq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AL705_03085
Transcription machinery [BR:
cbq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AL705_03085
DNA repair and recombination proteins [BR:
cbq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AL705_03085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF6076
Motif
Other DBs
NCBI-ProteinID:
ALE18818
UniProt:
A0A0M4MXB9
LinkDB
All DBs
Position
complement(679929..683882)
Genome browser
AA seq
1317 aa
AA seq
DB search
MRDVNFFDSLRISLATADDIRRWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVVTSVDEEARHNDLSTLEAEITAEKKEIEDGRDVDLEERAQKLEAD
LAELEAEGAKADTKRKVKDAAEREMKHIREDANRELDRLDILWDTFTKLEPKDLILDENV
YNELDDRFGEYFEAGMGAEAIQKLIEGFDLEAEAEVLREIIRTGRGQKKLRALKRLKVVA
AFIQSGNNPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIINNEKRMLQESVDALFDNGRRGRPVAGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNYAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPVLVEGKAIMLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEDPDAPGSYR
EDLHKECPTNGYYSSVAEAIMARDAGALSIQSPIVVRLTHQRPPKEIEAEQFPNGWQPGD
VWVCKTTLGRIMFNDLLPGDYPYVNDQMAKKKQAVIINDMAERYPMIVVAQTVDRLKDAG
FFWATRSGVTVAISDVQVPPAKKEILAAYDKRANKVEKQYQRGALSHDERNAALVKIWSE
ATEEVGQAMEDNYPATNPIPVIVKSGAAGNMTQMRSLSGMKGLVTDPKGSFIPQPIKSSF
REGLTVLEYFINSHGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTTRGIVVP
IAEVLPDGTLIRDPHIETSVFARTLAEDAKDKDGNVIVAGGTDIGDPEIDALLAAGVTEV
KVRSVLTCNSKNGVCAKCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GDDITGGLPRVQELFEARVPKGKAPIAEVSGTVKLEEGEKFWTITITPDDGSDDVVYDKL
SKRQRLHVLKKADGTEGVIDTGDHITIGEQLLEGAADPHDVLRVMGPRQVQIHLVNEVQG
VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLVERPEFEATNRAIVREGGIP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINSRVDNLIGLKENVIIGKLIPA
GTGITRYRDIQVHPTEEARAAAYAIPTGFDDGFYGPDDAFIDETGAAVPLDDFDFGE
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcgacgtcaacttcttcgattcactccgaatcagcctcgccaccgccgacgacatc
cgtcgctggtcctacggtgaggtcaaaaagccggagaccattaactaccgtacgctgaag
ccagagaaggacggcctcttctgcgagcgtatcttcggtcccacccgggactgggaatgc
gcctgtggcaagtacaagcgcgtccgcttcaagggcatcgtctgtgaacgatgcggcgtg
gaagtcacccgtgccaaggtgcgtcgtgagcgcatgggccacattgagctcgccgccccc
gtcacccacatctggtacttcaagggtgtgccctctcgtctgggttacctgcttgacctg
gcgcccaaggatctagaaaagatcatctacttcgcttcctacgtcgtcaccagcgtcgac
gaagaagcccgccacaacgacctctccaccctcgaagcggaaatcaccgccgagaagaag
gagatcgaggacggccgcgacgtcgacctcgaggagcgcgcccagaagctggaagctgac
ctggccgagctcgaagccgaaggcgctaaggctgacacaaagcgcaaggtcaaggacgct
gctgagcgcgagatgaagcacatccgtgaggacgctaaccgcgaactcgaccgcctcgac
atcctctgggataccttcaccaagctggagcccaaggacctcatccttgacgaaaacgtc
tacaacgaactcgatgaccgcttcggcgaatacttcgaggccggtatgggcgctgaagcc
atccagaaactcatcgagggctttgatctggaagccgaagcagaagtgctgcgcgagatc
atccgcaccggtaggggccagaagaaactccgtgctttgaagcgtctcaaggtagttgcc
gcctttatccagtccggtaacaacccggccggcatggtgctcgactgcattccggtcatt
ccgccggaactgcgccccatggtgcagctcgacggtggccgcttcgccacctccgacctc
aacgacctctaccgtcgtgtcatcaatcgcaacaaccgtctgaagcgcctcattgacctc
ggtgcccccgagatcatcattaacaacgaaaagcgcatgctgcaggaatcggtggatgcc
ctcttcgataacggacgtcgtggtcgccccgtcgcgggtcccggcaaccggccgctgaag
tcgctgtctgacctcctcaagggcaagcagggccgcttccgtcagaacctgctcggtaag
cgcgtcgactactccggtcgttccgttattatcgtgggtccgcagcttaagctgcaccag
tgcggtctgccgaagctcatggctctggagctcttcaaacccttcgtcatgaagcgcctg
gttgacctcaactacgcccagaacatcaagtccgccaagcgcatggtggaacgtcagcgc
ccgcaggtgtgggacgtgctggaagaggttatcgccgagcacccggtgctcctcaaccgt
gcacctaccctgcaccgtctgggtatccaggccttcgaaccggtgctcgtcgaaggcaag
gccatcatgctccacccgctggtgtgtgaagccttcaacgctgacttcgacggtgaccag
atggcagtccacctgccgctgtccgccgaggcacaggcagaagcccgcatcctcatgctc
tcctctaacaatatcctctccccggcatccggccgcccgttggccatgccgcgactggat
atggtgacgggtctctactacctgactaccgaggatcccgacgcgccgggttcctaccgc
gaggacctgcacaaggaatgccccaccaacggctactactcctccgttgcggaagccatt
atggcccgcgacgcaggtgccttgtctatccagtcgcccatcgtggttcggctcacccac
cagcgtccccctaaagagatcgaggcggagcagttcccgaacggctggcagcccggtgac
gtgtgggtctgcaagaccaccctcggccgcatcatgttcaatgacctgctgcccggtgac
tacccctacgtcaacgaccagatggcgaagaagaagcaggccgtcatcatcaacgacatg
gctgagcgctacccgatgatcgtggttgcccagaccgttgaccgtttgaaggatgctggt
ttcttctgggccacccgttccggtgttaccgtcgccatctccgatgtgcaggttccgccg
gctaagaaggaaattctggccgcctacgacaagcgtgccaacaaggtggagaagcagtac
cagcgcggtgccctttcccacgatgagcgcaacgctgctctcgtgaagatttggtccgag
gccaccgaagaggtcggccaggcgatggaagacaactaccctgccaccaacccgatcccc
gtgatcgtgaagtctggtgctgccggtaacatgacccagatgcggtcgctgtctggtatg
aaaggcctggtgacagatccgaagggtagtttcatcccgcagcccatcaagtcctccttc
cgtgaaggtctgaccgtgctggagtacttcattaactcccacggcgcgcgtaagggtctg
gctgataccgccctccgtaccgcagactctggctatctcacccggcgtctggtggacgtg
gcccaggacgtcatcgtccgcgaagaagactgcggtaccacccgcggaattgttgtgccg
atcgccgaggttctgcccgatggcaccctcatccgcgacccgcacatcgaaaccagcgtg
tttgcccgtactctcgctgaggatgccaaggacaaagacggcaacgtcattgtcgctggc
ggcaccgatatcggtgacccggagatcgacgctctcttggctgccggcgtcactgaggtg
aaggtgcgctccgtgctcacctgtaactccaagaacggtgtctgtgccaagtgctacggt
cgctccatggccaccggcaagctcgtcgacgttggcgaggctgttggtattgtggctgcc
cagtccattggtgagcccggtacccagctgaccatgcgtaccttccaccagggcggtgtc
ggtgacgacatcaccggtggtctgccgcgggtgcaggagctcttcgaagctcgtgtaccc
aagggcaaggcccctattgccgaggtgtccggtaccgtcaagctggaagagggcgagaag
ttctggaccatcaccattaccccggatgatggctccgacgacgttgtctacgataagctt
tcgaagcgtcagcgcctgcacgtcctgaagaaggcggatggcactgaaggcgttatcgac
actggtgaccacatcaccatcggtgagcagttgctggaaggcgctgccgatccccacgat
gtgctgcgtgtgatgggcccccgccaggtgcagatccacctcgtcaacgaggttcagggt
gtgtaccgctcgcagggtgtgtctatccacgacaagcacatcgaagtgatcgtgcgtcag
atgctacgtcgcgtcaccatcatcgactccggctccactgagttcctccccggttctctg
gtcgagcgccccgagtttgaggcaaccaaccgtgccattgtgcgcgaaggcggcatcccc
gccgcgggtcgtcccgtcctcatgggtatcaccaaggcctccctggctaccgactcctgg
ctgtctgcggcctccttccaggagaccactcgcgtcctcaccgacgctgccatcaacagt
cgagtcgataaccttatcggcctcaaggaaaacgtcatcatcggtaagctcatcccagct
ggtaccggcattactcgctatcgcgacatccaggtgcatcccaccgaggaagcgcgtgca
gctgcctacgctatcccgacgggcttcgatgacggtttctacggacccgacgatgccttc
atcgatgagaccggtgcggccgttccgctggacgacttcgacttcggcgaatag
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