Caenorhabditis briggsae (nematode): CBG_00421
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Entry
CBG_00421 CDS
T01054
Symbol
Cbr-sfa-1
Name
(RefSeq) Protein CBR-SFA-1
KO
K13095
splicing factor 1
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CBG_00421 (Cbr-sfa-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbr03041
]
CBG_00421 (Cbr-sfa-1)
Spliceosome [BR:
cbr03041
]
Complex A
Other components
Complex A specific factors
CBG_00421 (Cbr-sfa-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
KH_1
zf-CCHC
zf-CCHC_6
zf-CCHC_4
KH_KRR1_2nd
Motif
Other DBs
NCBI-GeneID:
8574395
NCBI-ProteinID:
XP_002632398
WormBase:
CBG00421
UniProt:
A0AAE9D2W6
A8WN19
LinkDB
All DBs
Position
IV:<402670..>405580
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AA seq
664 aa
AA seq
DB search
MSKTGGNMEPMPFVRKWGNDLNDEGDSSSAPAPSLVVPQISSSSTRSPSRSDSVAEKKKD
RSRSRSRDRDRDRKKDRKKKDRSRSRDRDRDRRSRSRSRDRDRDRDRESRRRRSSRSRSP
RRRSRDRRPERRRDRSPPLMVPNSPQRVKEPVINPLIRDDLVSAVESGAVAMEAVQVGSV
VPLNPTKKERKSRWSTTKSFVPGMPTILPADLTEDQRNAYLLQLEIEDATRKLRLADFGV
PEGRERSPSPEPVYDANGKRLNTREVRKRQELEQLRHEKIQALLKINPAFKPPADYRAPN
IRLHDKVWIPQEQFPDLNFVGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKEGKLTNRLG
PMPGENEPLHAYVTGTDMNVIKKACEKIKQVIAEATALPDNNELRKLQLRELALLNGTFR
PEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKGMYASEVG
MDDEYSALMAELGETPAGGASAGGQVASAGGGIQSMSDMSARGGRGGHQGGRGGHRGGFQ
NPRELFGPPKGEEEQTPASTMQGYYDQYQQYAYANQYQQYGAPAPDASAYGHQADYSDFY
TSPGARGGAGAKANKGWYGSGSSMPMPVPPPGSFGGFMPPPPPPPPMPGDLSSLLAAAPP
PPPS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaactggtggcaatatggaacccatgccgttcgttcggaaatggggaaacgat
ttgaacgacgaaggtgattcatcttcggcacccgccccttcccttgttgtgcctcaaatt
tcttccagttctacccgttcgccatctcgatcagattcagttgcggagaagaagaaagat
cgctctcgctcgagatcccgtgatcgtgaccgtgaccgtaagaaggatcgcaagaagaaa
gatcgctcccgatcccgggatcgtgatcgtgatcgtcgttcccgatctcgttcgcgtgat
agagatcgtgatagggaccgtgagtctcgtcgtcgtcgtagctcgcgttctcgttctcca
cgtcgtcgaagcagagaccgtcgtcccgaacgtcgtagggatcggtcaccaccattaatg
gttccgaacagcccgcaacgagtcaaagagccagttatcaatccactgattcgtgatgat
ttggtatcagcggtggagagtggtgcagttgctatggaagctgttcaagtaggatctgtg
gtccctttgaatcccactaagaaagaacgaaagagtcgttggtctacaacaaaaagcttt
gtcccaggaatgcccactattttaccagcagatttgacagaggatcaaaggaacgcctat
cttcttcaactcgaaattgaggacgcaacacgcaagcttcgtctagccgatttcggagtt
cctgaaggacgtgagagatcgccatctcctgaaccagtctacgatgctaatggtaaacgg
ttgaacactcgtgaagtgaggaagcgtcaggaattggaacagttgcgccacgaaaagatt
caagccttgctgaaaatcaatccagctttcaagcctccagcagattatcgtgctccaaat
attcgtctccatgacaaagtctggattccacaagaacaattccctgatctcaactttgtc
ggtcttctgattggtccacgtggtaacactctgaagagtttggaagctgaaacaggagcc
aagattattattcgcggtaagggatccatcaaagagggaaaacttacgaatcgtttgggc
ccaatgccaggagaaaatgagccacttcatgcgtatgtaacgggaactgatatgaatgtc
attaagaaggcgtgtgaaaagatcaaacaagttatcgccgaagctactgctttgccagat
aacaatgagctcagaaagttgcagttgagagaacttgcccttctgaatgggactttcaga
cccgaagatttggcaaacggagctcgttgctcaaactgtggttccgacgagcacaaatca
tgggaatgtccggatgcaccgaatgtcaccaaccagattaaatgtacgaactgtggagca
ttcggtcatatttcaaaagattgtaagaatccaaaaggaatgtacgcatcggaagttggt
atggatgacgaatattctgcacttatggcagaactcggagaaacaccagctggaggagcg
agtgccggtggtcaagtcgcgtctgctggcggtggtatacaatcgatgagtgatatgagt
gcaagaggtggaagaggaggtcatcaaggaggacgaggaggtcatcgtggaggcttccag
aatcccagagaattgttcggaccaccgaagggagaagaagagcagacaccagccagtact
atgcaaggatactatgaccagtatcagcaatacgcatacgctaaccaataccaacaatat
ggggctccagccccagatgcttcagcttatgggcatcaagcagattacagtgacttctat
acaagtcctggagccagaggaggcgctggagcaaaggcaaataaaggatggtacggtagc
gggtcttcaatgccgatgccagttccaccgccaggaagcttcggtggattcatgcctcca
ccaccaccaccgccaccaatgccgggagatttgtcttcacttcttgcagcggctcctcca
ccaccaccaagctaa
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