Caenorhabditis briggsae (nematode): CBG_01003 Help Entry CBG_01003         CDS       T01054                                  Name (RefSeq) Protein CBG01003   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism cbr  Caenorhabditis briggsae (nematode) Pathway cbr03013   Nucleocytoplasmic transport cbr03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:cbr00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     CBG_01003    03015 mRNA surveillance pathway     CBG_01003  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cbr03019]     CBG_01003 Enzymes [BR:cbr01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      CBG_01003     5.6.2.5  RNA 5'-3' helicase      CBG_01003 Messenger RNA biogenesis [BR:cbr03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      CBG_01003    mRNA cycle factors     Common to processing body (P body) and stress granule      CBG_01003 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_12 Viral_helicase1 AAA_19 AAA_11 UvrD_C_2 PhoH Motif Other DBs NCBI-GeneID:  8573260 NCBI-ProteinID:  XP_045091687 WormBase:  CBG01003 LinkDB All DBs Position II:complement(210757..217528) Genome browser AA seq 1885 aa AA seqDB search MYPSKNQIGQKQNHKKFTQNPEPCHFDNWERPSEAYAGTSGTHRIADWSKPWDHESIKYE STEKAKKAFVKSKNYDSESNSDIDDGPSTSEKNNYNEKDVFGKLDDDKEHDWEPKNNSVK LEVNWLPAKRWDESSEDDSEQNDQFSRSLEALKQEEQEEYYNSWDEESNDEEEKIRNPNK KLRDSAPTNKNSAPNNRCIRWDESSEDDSGLNDQYLRDLKAMKQKKHKEYYNSWDEESDD EKRKKRNPDKKLKDLGYTKQKEKQEKIVVSEVQPRLSNFPRFVVPVVGKMPVKKSEVEKS MAKMSFENPEKSELKVERTKADEAKSGDKIGLQNSKTLDIKTQETSKAEKEETKVPRKSL ESSKEPKYLKQKKETTQVSENEGTSTIEEKKPGIFSSFLLDRPIFEARSFEDLSQPTTST ATLSNEQVSFENPIGVFMAGISNRRPDRRERRRLKKQKAEEVKRLPDEEFEELCRLHALE TEKNVFSQFYAKKWPRQLRKPKNREISNFKHSEGAEFAAKSYFWDNNWDFDLPELPKPEQ MIMPLPTSTPDVYDDFAFYRVLMEKEDKYILVACHANVHGFHRGDLRFLEINSRSRLNRL EGQSVIGSLFLGDIVAVTELARNSEAISPVRDVDVSLVTPDTSCYWIVSKMILYPRNVDK KSPVLFSIVNRMAAIKGENEPMNLNVDNWDMMHADSIYTGLTFRPETLEYHFSKDYQKKK INELVVSARTIRSYPGIYGTIFKFKEGDHREEFKKEMHLNTYTDVSSPETTEPANASSES SSRVPTPIQKPECPKPSYFSAYAYTSNRSESPAYVNPFGVLNSDFIAEVEEKTEEEKIKE TEESKELKRLAELEHEKNVFSQYYQKKSGNRRENHRGRKSPQIPKTRKPSSCKHHEAIEF AAKSNLWDNNWDKDLPMLPRSQEIIMPLPASAPAQTEVCGLYRVLMEKNDKYILIACHVN VHGYHRGDLRFLEVNSRSRLKGLSEQSVIGSLFLGDIVAVTELARNSNAQSSVRDVKVSS VTQETRCYWIVSNMILYPRILKPDVTFSFLKNRMAVVKGEDEPMRVNCDDWKTVAPDLIY TGMAFSPIKLDDNFSDDFQRKSKNLLISNVLKISSYPNAFGIIYSYEECSEQNEEFKIGT KAYSDTLEIHKYKRERIVETCSLMGFSAANTIFNGRFDCRAFHMYDVSKEGPTVRFRIEN PRNRPTLGLWNNGNKILIGGPTGDTNGTIETVMCNSSHMGWLKIAARLTRECPKDFRFNG DLFVSQREPKDHYYLYDGYFQDMAPESNGRKIIETLYGGKPLELRTGDVGGEYFFPSTPE PIRLNVFQKEYVQMLLDGNPLVIGSSPFGCGKSMTIITAALEIYKRNAERNLVGKTHQLL ITQSNFASVNLIEIARKTCNSGDEKLRNMKFMRFITDKNWNEQPDHGRTKFDMPFLMNKV FKQWAIGELDGNELMTHHTKSMIAHIIRNGTVTVDELCSAARRVFDKYGDCKIPFSGHLT EAFFILYEPDLIMTTADSSKSVCTLLDKKYETNKNECTTVQIDEASQLPEYTLLGLLKTY NKANFGLIGDIHQLPPFCMEELEGRLKEFGIGNTMERAIQNKLFPISNLRYVYRCHPQTT ALLSELFYDGKLISGVTESQRNEFMIKRKDFWPNPSYPVMIINHMGTCQRMGTSAQNHSE KDLVSYMVQNLLDQRKYTLKPQDIGVISFYAAQTSLLTEQLRRSGVKCGTVDAFQGSEKE VIILCCTNEHATEFMQCKFRLNVALSRAKQATVIVGNLGYLRKAKYWNAIVKRVEAYGNL RQSDDKNLFNSRQAYVSTSSSYVKNPFYMHDPYNRNAPVESVLNYPTGQRQKNHKRNETR QQQDDNAMSGRWDNNSWSYYNNGYR NT seq 5658 nt NT seq  +upstreamnt  +downstreamnt atgtatccatctaaaaatcaaattgggcagaaacagaaccataaaaaattcacacaaaat cctgaaccgtgccatttcgacaattgggaacgaccaagtgaagcttatgctggaacttct gggacccaccgaatcgctgattggtccaagccatgggaccatgaatccatcaagtatgaa tcaacagagaaggctaaaaaagctttcgtcaaatcgaaaaattatgattcagagtccaat agtgatattgatgatggaccaagtacgtcagaaaagaacaattacaacgaaaaagatgtt tttggaaaattggatgatgacaaagaacatgactgggaaccaaagaataattcagtgaaa ctagaggtcaactggttgcctgctaagagatgggatgagtcgtcagaagacgatagtgaa caaaatgatcagttttcaagaagtttggaagctctgaaacaggaggaacaagaagaatac tacaacagttgggatgaggaatcaaatgatgaagaggaaaagatacgaaatccgaataag aaattgagagattcagcacctactaataagaactcagcacctaataataggtgcattaga tgggatgagtcgtcagaagacgacagtggactcaatgatcaatatttaagagatttgaaa gctatgaagcagaaaaaacacaaagaatactacaacagttgggatgaggaatcagatgat gaaaagcgtaagaaacgaaatccggataagaaattgaaagatttgggatatacaaaacag aaagagaaacaggagaaaattgtggtttcggaagttcagcccagactctccaattttcct agatttgtggtaccagtcgttggaaaaatgcctgttaaaaaatctgaagtggaaaaatct atggcaaagatgagctttgagaatccagaaaaatcggaactaaaagtggaaagaacaaaa gccgacgaagccaaatcaggagataaaattggtcttcaaaattccaaaactttggatatt aaaacacaggaaacttctaaagctgaaaaggaggaaaccaaggttcccaggaaaagtttg gaaagttccaaagagcctaaatacttgaaacagaaaaaagaaacaactcaagtatctgaa aatgaaggaacttcaacaattgaagaaaagaagcctggaattttttcttcgtttctgtta gaccgtccaatttttgaggcccggagttttgaggatttatcgcaaccaacaacttccacc gcaacgctttcaaacgagcaagtttcttttgagaatccaattggagttttcatggcagga atttcgaatcggaggcctgatcgccgagaacggagacgtttgaaaaagcaaaaagcggaa gaagttaagcgtttgccggacgaggaattcgaagaactgtgtaggctccacgcacttgaa accgagaaaaacgttttctctcaattctacgctaagaaatggcctcgccaattgagaaag cccaaaaatagagaaatctccaatttcaagcattcggagggcgcggaatttgcagccaaa tcctatttttgggacaacaactgggactttgatttaccggaacttccaaaacccgaacag atgatcatgcctcttccaacatctacacctgatgtttatgatgattttgcattctatcga gtgttgatggagaaggaagacaagtacatcttggttgcatgccacgccaatgttcatggc ttccatcgaggagatcttcgattcttggaaatcaattctaggtcaagactgaataggttg gaaggacaaagtgtgatcgggagcttgtttcttggagatattgtcgctgttaccgaactt gccaggaattctgaagcgatatcaccggtgagagatgtcgatgtctcattagtaactccg gatacctcttgttattggattgtgtcaaaaatgatactgtaccctcgaaatgtagacaaa aaatctccagttttattttcaatcgtgaatagaatggcagcaattaaaggagagaacgaa ccaatgaatctgaatgtagacaactgggatatgatgcatgctgactctatctacaccgga ttgacgtttcgtccagagacgctggagtaccacttttcgaaagattaccaaaagaaaaaa attaatgagcttgtcgtcagtgcaagaactatccgcagctatccaggaatatatggaaca atctttaagtttaaagaaggcgatcatcgggaagagttcaaaaaagaaatgcatttgaat acttacactgatgtctcgagccctgaaacgactgaacctgcgaacgcttcctctgagagt tcttcaagagtgccaacacctattcagaagccagaatgcccaaaacctagctacttctcc gcctatgcctatacatcaaaccgttctgaatcacctgcttatgtgaacccgtttggagtt ctaaactcggatttcattgcagaagtcgaagaaaaaacagaagaggagaaaataaaggag acagaggagtccaaagaattgaagcggcttgctgagttagaacacgagaagaatgttttc tcacagtactaccagaaaaagagcggcaacagaagagaaaatcaccgtggtaggaagtca ccacagataccaaaaaccaggaagccctcaagctgtaaacaccacgaagccatcgagttc gctgccaagtccaacttgtgggataacaactgggacaaggacctgccaatgttgccaaga tcacaggaaattatcatgccgctgcctgcatctgcacctgcgcagactgaagtttgtgga ttatatcgagtgttgatggaaaagaatgataagtacatcttgattgcgtgtcatgtgaac gttcatggatatcatcgaggtgatcttcgattcttggaagtcaattctaggtcaagactg aaaggattgagtgagcagagtgtgattggtagtctgtttcttggagatatcgtcgctgtc actgagctcgccaggaactccaacgcccaatcttcagtgagagacgtcaaggtgtcatct gtcactcaggaaactagatgctattggatcgtgtcgaatatgattctgtacccccggatt ctcaaaccagatgttacattctccttcttgaaaaatcgaatggctgtggtgaaaggggag gacgaaccgatgcgtgtaaactgtgatgactggaaaacggtggcacctgatttgatctat actggaatggcattctcaccaatcaaactggatgacaatttctcggacgatttccaacga aaaagcaaaaacctgcttatatcgaatgtgttaaaaatttcgagctatcccaacgcattc ggaatcatctacagttatgaagaatgtagtgaacagaacgaagagttcaaaattggcacg aaagcttactcagacactcttgaaattcataagtataaacgagagagaatcgtggagaca tgttcattaatgggattcagtgcagccaatacaattttcaatggccgattcgactgccgc gcattccatatgtacgatgtgtctaaagaaggtcccactgttagattccgaatcgaaaac ccacgaaaccgcccgacacttggtctgtggaacaatggaaacaaaatcctcattggtgga ccgacgggagataccaatggtaccattgaaacagtgatgtgtaattcaagccatatggga tggctgaagattgcagcaagactcaccagagaatgccccaaagattttcgcttcaatggt gatttgtttgtatcacaacgagagccaaaagaccattattacttgtatgatggatatttc caagacatggcgccggagagtaatggaaggaagataattgagacattgtatggaggaaaa ccattggaacttcgaactggagatgttggtggagaatacttcttcccaagtaccccggaa ccaattcgtctaaacgtatttcaaaaagaatatgttcaaatgctgcttgatggcaatcca cttgtcataggatcatcaccattcggatgtggtaagtctatgactatcatcacggcggca ctggagatttataaacgaaatgcggagagaaatcttgtcgggaagacccatcaacttttg attacgcagagtaatttcgcgagtgtcaacttgatcgagatcgccagaaagacatgtaac agtggagatgaaaaacttcggaatatgaaattcatgagatttattaccgacaaaaattgg aatgagcaaccggatcatggccgaacgaagtttgatatgccgtttttgatgaacaaggtt ttcaagcaatgggcgataggagagctggatggaaatgagctcatgacgcaccatacgaag agcatgattgcgcatatcatcagaaatgggacggtaactgtggacgagttgtgttctgcg gctagaagagtttttgataaatatggagactgcaagataccatttagtggccatctaaca gaagcattcttcattctctacgaaccggatcttattatgactaccgctgattcgtcgaaa agtgtttgcactttattggataaaaaatatgaaactaacaagaacgaatgcactacagtt caaatcgatgaggctagtcagctaccagaatacactctgttgggactactcaaaacttac aacaaggcaaactttggattgatcggagacatccatcaacttcctccgttttgcatggaa gaactcgaagggcgtctcaaagaattcggtattggtaacacaatggaacgagcgattcaa aataaactcttcccgatttcaaaccttcgatatgtctatagatgccacccacagacgact gctttgttgagtgagctgttttatgatggaaagctgatctctggagtcactgaaagccaa cggaatgaatttatgataaagagaaaggatttctggccgaatcccagttacccagttatg attatcaatcatatgggtacctgtcaaagaatgggaacctctgctcaaaaccactcggag aaggatctagtcagctatatggttcagaatctgttggatcaaagaaaatacacactgaag ccacaggatattggagtcatttctttttacgctgcacaaacgtcactgctaaccgaacaa cttcgacggagtggtgtgaagtgtggtacggtggacgcgtttcaaggatccgagaaagag gtgatcattttgtgttgtacaaatgagcatgcgactgaattcatgcaatgcaaatttcga ttgaatgtggctctatcgagagcgaaacaagcgacggtgattgttggaaatttgggatac ttgaggaaagcaaagtattggaatgcgattgttaaaagagtggaagcttatggaaacttg agacaatcggacgacaaaaatctcttcaactcccgacaagcctatgtatccacgtcatcg tcatatgtcaaaaatccgttttatatgcatgatccgtacaatcgtaatgctccagtcgaa tcggttctaaactatccgactggtcaacgccagaaaaaccataaaaggaatgagacgcgc caacagcaggatgataatgccatgagcgggcgatgggacaacaactcctggtcctattat aataatggataccgatga

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