Caenorhabditis briggsae (nematode): CBG_01489
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Entry
CBG_01489 CDS
T01054
Symbol
Cbr-symk-1
Name
(RefSeq) Protein CBR-SYMK-1
KO
K06100
symplekin
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CBG_01489 (Cbr-symk-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbr03021
]
CBG_01489 (Cbr-symk-1)
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_01489 (Cbr-symk-1)
Transcription machinery [BR:
cbr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CBG_01489 (Cbr-symk-1)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CBG_01489 (Cbr-symk-1)
U7-dependent histone pre-mRNA processing factors
CBG_01489 (Cbr-symk-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
8577318
NCBI-ProteinID:
XP_045091854
WormBase:
CBG01489
LinkDB
All DBs
Position
V:complement(<1197474..>1202150)
Genome browser
AA seq
1198 aa
AA seq
DB search
MSYIELDDDKESATERIGETLREAREAATIDKKLTCLSTAMHLLIDPNISNNVLDNFLTE
MLEFAELNDYRIICLIIDFLQKASAKDLTICNKAVERYNFYLIPNDNISHNESVIKRVVV
ASTSLYPVVLEFAIMDKNDKAESCWEAFNLLKSRICNLVNDPHEGIRTVTVKFLEALILC
QSPAPKEMSAEWAKEANTRFHKISLSDIPRSHRFLSIHKAQLEAEQNFTALITQTTVADI
TSQNLIAVIECLCMISRCRPLWEEAMPRVFEVIKTLHSNVPAMLSKGQVKFLRKSFKSNL
LRFLKIPASVNPQYNLQPKIMGMLTNYLGASAREVNQSIPPDLIKSPTPARATFAEPAAK
RAKVNNPIYDDDDEGEGSEASTSKAKMDARTQAIDITAKYILERLNHDTVNNLVKIALFT
LPEEMPAAFASSYTPIANAGTESNRKELSELMAAQMVHKEVGPGYEWLVQKRRKEHEAKT
KARNEGIAIAPTPHHEPNTRMPVVKQPAAPEKAPVAQKAKKAFNLVEETEKIDAKGAAEL
FELAYDSVLDAERRANAGGAGKIYMKLVVRLTTRFWEDCTPYENKFVEFILADHKKRFDL
AHLWLCELYAQYQGYSNCALRIKDAIANQDGMTQPQRLERYDNAVCKIMDEMLERNLQKE
TIFYKLLLEIPLLTPNAMCRLQNVCLGKDNETGMFMLRETLMVRNRQRPQLLQFLFSLCF
MDRPEVHKGCMDVVKELSHLPFIRSSLCDQARMQLNDCLEEKPPAYMRKPGAPEEWTDEI
YKNSLSVYSILMPVDPTLLLPLAAVYAKSTNMFKRSILRVLEPVMRQLSQESVISLIVDC
PHGAETLVARLVVLISERDRPSQELIQKLKILHDERKMDIRALLPIIFGLEKEEVMQLIP
TFIFKTEYQKSVSTLFRKIYTARDFKTGELNFDPVDVIQRYHKIEPKDDHEAELLVNNLE
SLFDPAVLKPDLASKGIEAIFKWEQVPFLFLHSLYTLYHKFKTFDSFVANLFYKVTEKKM
YQQSDRWKKAFFKCIREMKAKAYPAVLILISFEEYEELKAELGPECVTEFKAIYQTLSTL
QQKNMNSSSVKLFCFLLIRRFSAKKSKRSCTTRSVKLVTVIDVSGEKNGRNGRRKKNGAL
DDEIATSSAATTMFNISITGLLIWFFFHSFIQISCSYLYYSCLKSMHVVAEKTTVGGA
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgagttacatcgaacttgacgatgacaaggaatcggcgacagaacggatcggagaaacg
ttgagggaggcacgagaagcagcaactatcgacaagaagttaacatgtctatcgacggcg
atgcatttactaatcgatcccaatatctccaacaacgttctcgacaactttctaaccgaa
atgttggaattcgcagagctcaacgactaccgtatcatatgccttatcattgattttcta
caaaaagcgagtgcgaaagacttgacgatctgtaacaaagccgtcgagagatacaacttt
tatttgattccgaacgacaacatttcacacaacgaaagtgtcatcaagcgagtagttgta
gcatccacaagtctgtatccggttgttctagaatttgcgataatggataaaaatgataaa
gcagaaagttgttgggaggcattcaatctgttgaaaagtcgaatatgcaatcttgttaat
gatcctcacgaaggcattagaactgttactgtcaaattcctagaagctcttatcctttgc
caatcaccggctccaaaagaaatgtccgctgaatgggcgaaggaagcaaacacccgattc
cataaaatctcactatccgacatcccaagaagccatcgcttcctatcgattcacaaagcg
cagctagaagccgaacaaaacttcacagctctaatcacgcaaaccactgtagccgatatc
acctctcaaaatttaatcgctgtcatcgagtgtctttgcatgattagtagatgtcgtcca
ctttgggaggaagctatgccacgtgtcttcgaagtaatcaaaactctccattcaaatgtt
ccagcaatgctcagcaaaggacaagtgaagttcctgagaaagtctttcaagtcgaatttg
cttcggttcctgaaaatcccagcatccgtcaatccacaatacaatcttcaacctaaaatt
atgggaatgctcacaaactacctgggtgcttcggcaagagaagtaaaccagtctattcct
ccagacctcatcaagtcgccaactccagcaagagctacgtttgcagagcctgctgctaaa
cgagccaaggttaataatccgatttatgatgacgatgatgagggggaaggatcagaagcg
tcaacgagtaaagccaagatggatgccagaactcaagctatcgatataacagcgaaatat
attctagaacggcttaatcatgacactgttaacaatctcgtcaaaattgccttgttcact
ttgccagaagaaatgccagctgctttcgcttcatcctacactccgattgcgaacgctgga
acggaatccaaccgaaaagagctttcggagctcatggccgcgcaaatggttcacaaagaa
gttggtcccggatacgaatggctggttcaaaagcggaggaaagagcacgaggcgaaaacc
aaagcgagaaacgagggaatcgctattgcccctacaccgcatcatgagccgaatacacga
atgcccgttgtgaagcaaccagcggcgccagagaaagctcccgtagctcaaaaagcgaag
aaggcgttcaatttggtggaggagacggagaaaatcgacgcgaaaggagcggcagagttg
tttgaattggcatatgactcggtgctagatgcggagagaagagctaatgcaggaggagcc
ggaaagatttatatgaagctagttgtcaggctgacaacccggttttgggaagactgcacg
ccatatgaaaacaagtttgtggaatttatccttgcagatcataagaaacgattcgatttg
gctcatctttggctctgcgagctgtacgcccaataccaaggatactcaaactgtgcactc
aggattaaggatgcgatagcgaatcaagatggaatgacacaaccgcagaggttagagaga
tatgacaatgcggtttgcaagattatggatgagatgttggagcgaaatctacagaaagag
actatattttataagcttctactggaaatacctcttctgacgccaaatgccatgtgtcgg
ttacagaatgtttgcttaggaaaggataacgagacaggaatgttcatgcttcgtgaaacg
ctgatggttcggaatagacaacgaccccaactgcttcaattcttattcagtctctgcttc
atggaccgtccagaagttcacaaaggatgtatggatgttgtcaaagagctcagtcatctg
ccatttattcgaagctctctttgcgatcaggctagaatgcagctcaacgattgtttagag
gagaagccaccagcgtatatgagaaagcctggtgcgcctgaagagtggaccgatgagatc
tacaaaaattcactgtcagtttactcgattttgatgccggtagacccgacgcttcttctt
ccgttagccgctgtttatgcaaaatcgacgaatatgttcaagcggtcgattctgagagtt
ctagagccagtgatgcgacagctcagccaggagagtgtgatttctttaatcgtcgattgt
ccacacggagccgaaactcttgttgcgcgtctagtcgttttgatttctgaaagagacaga
ccatcgcaggaattgattcagaagctaaagatacttcacgacgagcggaagatggatatt
cgcgctttgcttcctatcatattcggactcgaaaaagaagaagtcatgcaactgatccca
acgttcattttcaaaacggaatatcagaagtcagtaagcacactgttccggaagatctac
acagcgcgcgacttcaaaacaggagagctcaatttcgatccggtcgatgtcattcaaaga
tatcacaaaatcgagccgaaggatgatcatgaagctgaattgctagtaaataatctggaa
tctctcttcgatcctgcagtgttgaaaccggacctggcttctaaaggaatcgaagccatc
ttcaagtgggagcaagtgccattccttttccttcactcactatacacactttatcataag
ttcaaaaccttcgactcgttcgtcgccaacctcttctacaaagtcacggagaagaagatg
tatcaacagtctgatcgatggaagaaggcattcttcaaatgcattcgagagatgaaggcg
aaggcgtacccggcagtgttgatcctgatcagttttgaagagtacgaagagctaaaagca
gagttgggacctgaatgtgtcactgaattcaaggccatctatcagacgctgtccacgttg
cagcagaagaatatgaattcaagctctgtgaagctgttctgcttcttattaatccgacga
ttttcagcgaaaaaatcaaagaggagctgtacgacaaggagcgtgaaactcgtgaccgtg
atcgacgtctccggcgagaagaacggaaggaacgggagaaggaaaaagaacggagcactc
gacgatgaaatcgccacgtcatctgcagctactacaatgttcaatatctcaataacgggt
cttttaatttggtttttctttcattctttcatacagatttcttgttcatatctctattac
tcttgtctgaaatcaatgcacgttgtggccgagaaaactacggtgggcggagcttag
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