KEGG   Caenorhabditis briggsae (nematode): CBG_01798
Entry
CBG_01798         CDS       T01054                                 
Symbol
Cbr-cpsf-3
Name
(RefSeq) Protein CBR-CPSF-3
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CBG_01798 (Cbr-cpsf-3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbr03021]
    CBG_01798 (Cbr-cpsf-3)
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_01798 (Cbr-cpsf-3)
Transcription machinery [BR:cbr03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     CBG_01798 (Cbr-cpsf-3)
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     CBG_01798 (Cbr-cpsf-3)
    U7-dependent histone pre-mRNA processing factors
     CBG_01798 (Cbr-cpsf-3)
SSDB
Motif
Pfam: Beta-Casp CPSF73-100_C Lactamase_B Lactamase_B_6 Anti-Pycsar_Apyc1 Lactamase_B_2 RMMBL Lactamase_B_3 YliH
Other DBs
NCBI-GeneID: 8576223
NCBI-ProteinID: XP_045091874
WormBase: CBG01798
LinkDB
Position
IV:complement(<10441621..>10444563)
AA seq 727 aa
MEESSDNSDALSFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEI
ENIDLLLITHFHLDHCGALPWLLQKTAFRGKCFMTHATKAIYRMLLGDYVRISKYGGADR
NQLYTEDDLEKSMAKIETIDFREQKEVNGIRFWPYVAGHVLGACQFMIEIAGVRVLYTGD
FSCLEDRHLCAAEIPPVSPQVLITESTYGTQTHEDRSVREKRFTQMVHDIVTRGGRCLIP
AFAIGPAQELMLILDEYWEAHQELHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQKQIAI
KNPFIFKHVSTLRGMDQFEDAGPCVVLATPGMLQSGFSRELFENWCSDSKNGCIIAGYCV
EGTLAKHILTEPEEIVSLSGEKLPMRMQVGYVSFSAHTDFNQTSNFVKTLKPPHLPSQSR
NRTIVPRHKYSNRGLFERMLGRYHNLFQVHNPRNTERLELQFRGEKTAKVIGKLAERMPE
NNKIISGVLVKNNFSYSLMAKDELGSYTSLRTSSLEQKMSVHYSNSLRLLIFNLNQLNDD
ATLTQNVKVKEMLKKGSVTHVISVFGVSLCLVSIAINCLFFQGKVIVSYYGNDSVAVVRW
ESNPVSDMYSDSVMAAILHAQSNPVPDKYLPSSSSFPPLTTALEGMVKHICGDEVSLVSS
ERGLLACFEEDGRRLPIEGNPDGPPTMGGDDPMDDPTTSHLLQGLTEKFKQIVTTNNEFD
HLDDMEY
NT seq 2184 nt   +upstreamnt  +downstreamnt
atggaggaaagtagcgacaattctgacgctctaagcttcaccccgctaggttctggacaa
gaagtcggaagatcatgtcacttgctggagtacaaaggaaaacgggttatgcttgattgc
ggagttcatccaggacttcatggtgtggacgctctcccattcgtcgactttgtggaaatc
gaaaacatcgaccttctacttatcacccatttccatttggaccattgtggtgccctaccg
tggcttctgcagaaaactgcgttccgtggaaaatgctttatgacgcatgcaacaaaagcc
atctatagaatgcttctaggagattatgttagaatttctaaatatggcggggcagatcgt
aatcagttgtacacagaagatgatctagagaaaagcatggctaaaatcgagacgattgac
ttccgggagcagaaagaagtgaacggaattcgattctggccttacgtagctggtcatgtt
cttggtgcatgtcaattcatgatcgaaattgctggagtacgagtactgtataccggagat
ttttcgtgtctggaagatcggcatttgtgtgctgctgagattccaccagtttcgcctcaa
gttttaatcacagaatcaacatatggaacacaaacacatgaggatcgatctgtccgagaa
aaacggttcactcaaatggtgcatgatatcgtcacaagaggtggcagatgcttgattcca
gcttttgctataggacctgctcaagagctcatgctcatactagacgaatattgggaagca
catcaagaacttcatgatatccctgtctactatgcatcatcccttgcgaaaaagtgcatg
tccgtttatcagacatttgtgaatggaatgaattcgagaattcaaaagcagattgctata
aagaatccattcattttcaagcatgtatcaacacttcggggaatggatcagtttgaagat
gctggaccatgtgttgtattggcgacacctggaatgttgcagagtggattcagcagagaa
ctgtttgagaattggtgttctgattcgaagaatggatgtatcattgctggatattgtgtg
gaaggaacactagctaagcatatcttgactgaacccgaagaaattgtttctttgagtgga
gaaaagcttccaatgagaatgcaagttggatatgtttcgttttctgcgcacaccgatttc
aatcaaacttcgaattttgtaaaaacgctgaaacctcctcatttgccgtctcaaagcagg
aatcgaacgattgttccaagacataaatattccaatcgaggtttgttcgaaagaatgcta
ggtcgatatcataatttgtttcaggtacataatcctcgcaacactgaacgattggaactc
cagttcagaggtgaaaaaacagccaaagtgattggaaagctcgcagagagaatgccagag
aacaataagattatcagtggagtacttgtgaaaaacaacttttcctattccttgatggct
aaagatgaacttggatcctatacttctctccgtacttcaagtttggaacaaaaaatgtcg
gttcattattccaactcattacgattactcatcttcaacttgaatcaactgaatgatgat
gctactttgacacaaaacgtaaaagttaaagaaatgctgaagaaggggagtgtgactcat
gtgattagcgttttcggagtaagtttatgtctcgtttcaatagctattaattgtttattc
tttcagggaaaagttatagtatcatattacggtaatgattccgtggctgtagtcagatgg
gagtccaatccagtatcagacatgtattcggactctgttatggctgcaattttgcacgca
caatccaacccagttcctgataaatatttgccatcaagttcatcgttcccacctcttacc
actgcattagaaggaatggtgaagcatatttgtggagatgaagtttctttggtttcaagt
gaacgcggactattggcatgtttcgaagaagatggtagacgtctacccattgaaggaaac
ccggacggccctccaaccatgggtggtgatgatccgatggacgatccaactacctcccat
ctgctacaaggactgacagaaaaatttaaacagattgtgaccacaaacaatgaattcgat
cacctagatgatatggagtattag

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