KEGG   Caenorhabditis briggsae (nematode): CBG_02963
Entry
CBG_02963         CDS       T01054                                 
Symbol
Cbr-lsm-1
Name
(RefSeq) Protein CBR-LSM-1
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CBG_02963 (Cbr-lsm-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_02963 (Cbr-lsm-1)
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CBG_02963 (Cbr-lsm-1)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CBG_02963 (Cbr-lsm-1)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 8572691
NCBI-ProteinID: XP_002631177
WormBase: CBG02963
UniProt: A0AAE9DKI7 A8WT38
LinkDB
Position
II:complement(8002062..8002507)
AA seq 125 aa
MDLPDPYLPGAISLFEQLDKKLLVVLRDGRKLIGYLRSIDQFANLILEDVVERTFVEKYF
CETGQGFMLIRGENVELAGEIDDSIPTGLTQVSPEEFRRIEDEYLAKNPPKFLKRQAEKT
EEHEA
NT seq 378 nt   +upstreamnt  +downstreamnt
atggatcttcctgacccatatcttccaggagccattagtttgttcgaacaactagacaag
aagctgttggttgtgctccgtgatggtcgcaagctgatcggatatttgcgatcgattgac
caattcgctaacttgatactcgaggacgtcgttgagcgaacattcgttgaaaaatatttc
tgtgaaacaggtcaagggttcatgctgatacgaggagagaatgtagaattagccggcgaa
atcgacgacagtatccctactggactaacacaggtgtcacccgaagagttccgtcgtatc
gaagatgaataccttgcaaaaaatcctccaaaattcctgaaacgccaagctgaaaagaca
gaagaacatgaagcctga

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