Caenorhabditis briggsae (nematode): CBG_02963
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Entry
CBG_02963 CDS
T01054
Symbol
Cbr-lsm-1
Name
(RefSeq) Protein CBR-LSM-1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBG_02963 (Cbr-lsm-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_02963 (Cbr-lsm-1)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CBG_02963 (Cbr-lsm-1)
mRNA degradation factors
5'-3' decay
Lsm complex
CBG_02963 (Cbr-lsm-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
8572691
NCBI-ProteinID:
XP_002631177
WormBase:
CBG02963
UniProt:
A0AAE9DKI7
A8WT38
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All DBs
Position
II:complement(8002062..8002507)
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AA seq
125 aa
AA seq
DB search
MDLPDPYLPGAISLFEQLDKKLLVVLRDGRKLIGYLRSIDQFANLILEDVVERTFVEKYF
CETGQGFMLIRGENVELAGEIDDSIPTGLTQVSPEEFRRIEDEYLAKNPPKFLKRQAEKT
EEHEA
NT seq
378 nt
NT seq
+upstream
nt +downstream
nt
atggatcttcctgacccatatcttccaggagccattagtttgttcgaacaactagacaag
aagctgttggttgtgctccgtgatggtcgcaagctgatcggatatttgcgatcgattgac
caattcgctaacttgatactcgaggacgtcgttgagcgaacattcgttgaaaaatatttc
tgtgaaacaggtcaagggttcatgctgatacgaggagagaatgtagaattagccggcgaa
atcgacgacagtatccctactggactaacacaggtgtcacccgaagagttccgtcgtatc
gaagatgaataccttgcaaaaaatcctccaaaattcctgaaacgccaagctgaaaagaca
gaagaacatgaagcctga
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