Caenorhabditis briggsae (nematode): CBG_02999
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Entry
CBG_02999 CDS
T01054
Symbol
Cbr-cyn-4
Name
(RefSeq) Protein CBR-CYN-4
KO
K10598
peptidyl-prolyl cis-trans isomerase-like 2 [EC:
5.2.1.8
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
CBG_02999 (Cbr-cyn-4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbr03041
]
CBG_02999 (Cbr-cyn-4)
03110 Chaperones and folding catalysts [BR:
cbr03110
]
CBG_02999 (Cbr-cyn-4)
04121 Ubiquitin system [BR:
cbr04121
]
CBG_02999 (Cbr-cyn-4)
Enzymes [BR:
cbr01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.8 peptidylprolyl isomerase
CBG_02999 (Cbr-cyn-4)
Spliceosome [BR:
cbr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CBG_02999 (Cbr-cyn-4)
Complex C
U4/U6.U5 tri-SnRNP related factors
CBG_02999 (Cbr-cyn-4)
Other splicing related proteins
Minor spliceosome components
Minor spliceosome associated proteins
CBG_02999 (Cbr-cyn-4)
Chaperones and folding catalysts [BR:
cbr03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
CBG_02999 (Cbr-cyn-4)
Ubiquitin system [BR:
cbr04121
]
Ubiquitin ligases (E3)
U-box type E3
CBG_02999 (Cbr-cyn-4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pro_isomerase
Rtf2
zf-Nse
zf-NOSIP
U-box
Motif
Other DBs
NCBI-GeneID:
8572717
NCBI-ProteinID:
XP_002631203
WormBase:
CBG02999
UniProt:
A8WT12
LinkDB
All DBs
Position
II:complement(7837759..7839658)
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AA seq
523 aa
AA seq
DB search
MGKKQHQKDKLYLTTSEWKSIGGHKDDTGTRLQRAQFKRLPINHCSLSLLPFEDPVCARS
GEIFELTAIVPYVKKHGKNPCTGKPLTAKDLIHLKFDKGEDGKFRCPVTFRTFTDHSHIL
AIATTGNVYSYEAIQELNLKRNHLKDLLNDVPFTRADIIDLQDPNHLEKFNMEQFLHVKL
DLKTSEEIKKEKEAMKDPKFYIRRMNNACKSVLDQLDKEYVPRQNEVEADQTADEINAAH
YSQGKVAAGFTSTVMAPVTSNKAAVLDDDTVRYSRVKKNGFVRLVTNFGPLNLELYCQKA
PKACENFITHCTNGYYNNTKFHRLIKNFMLQGGDPTGTGHGGESIWGKPFTDQFVSGFSH
DARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIEKLETEEGTD
VPMVNVMIMRAEVFVDPFEEAEKEVQAERAEILKKTSKDAALMASKKEIDSISKPKAVGT
GVGKYMKSTASANKRQGQMEDVPLEAAKKKKFARAGLGDFSKW
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaagcaacatcaaaaggataaactatatttaacaacatcagaatggaaatcg
atcggaggacacaaagatgatactggaactcgtcttcaaagagctcagttcaaacggctc
ccgattaatcattgttctttgtcgctccttccgttcgaagatccagtttgtgccagatct
ggagaaattttcgaactaaccgccatcgttccttatgtcaagaagcatggaaaaaatcca
tgtactggaaagccattgacggcgaaagatcttattcatcttaaatttgacaaaggagaa
gatggaaagttcagatgcccagttacattccgcacattcacagatcacagtcacattcta
gccatagccacaactggaaacgtttactcttacgaagcaattcaagaactgaatttaaag
agaaaccatctaaaagacctcctcaatgacgttcctttcaccagagcagatattattgat
cttcaagatccgaaccatcttgagaagttcaatatggaacaattcttgcatgtcaagctt
gatctcaaaacgtctgaagaaataaagaaagaaaaggaggctatgaaagatccgaaattt
tatatccgtcgaatgaacaatgcttgtaaatcggtattggaccagttggataaagaatat
gttcctagacagaatgaagtggaggcagatcaaactgccgatgaaatcaatgcagcccat
tatagtcagggaaaagtcgcagcgggattcacatctacagtaatggcaccagtgacaagt
aataaagctgcagttcttgatgatgacacagttcgatatagtcgagttaaaaagaatgga
ttcgttcggcttgttaccaactttggacctttgaatttggagctttattgtcagaaagcg
cccaaagcatgtgagaattttatcacacattgcacgaatggatattacaataacacaaaa
ttccatcggcttattaaaaatttcatgcttcaaggcggtgatccaactggaactggtcac
ggaggagaatcgatttggggaaaaccattcacagaccaatttgtttctggattctcccac
gatgccagaggtgttctttctatggccaacaagggatcaaatacgaatggatcgcagttt
ttcattactttccgaccttgcaagtatttggacagaaagcatacaattttcggaagattg
gttggaggacaggatacgctcacaactatcgaaaagttggaaacagaagaagggaccgat
gttccgatggtcaacgtgatgatcatgagagctgaagtttttgttgatccatttgaagag
gcagagaaagaagtgcaagctgaaagagcggaaattttgaaaaaaacttccaaagacgca
gcattgatggccagcaaaaaagagatagactcaatctccaagccaaaggcagtgggcact
ggcgtaggcaagtacatgaagtcgaccgcatctgccaacaaacgacaaggacaaatggaa
gatgtgcccttggaagctgcaaagaaaaagaaattcgcgagagctggtctcggagatttc
tcgaagtggtga
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