Caenorhabditis briggsae (nematode): CBG_03017
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Entry
CBG_03017 CDS
T01054
Symbol
Cbr-npp-19
Name
(RefSeq) Protein CBR-NPP-19
KO
K14313
nuclear pore complex protein Nup53
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CBG_03017 (Cbr-npp-19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_03017 (Cbr-npp-19)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
CBG_03017 (Cbr-npp-19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_Nup35
Nup35_RRM_2
VP4_haemagglut
Motif
Other DBs
NCBI-GeneID:
8572734
NCBI-ProteinID:
XP_002631220
WormBase:
CBG03017
UniProt:
A0AAE9IUA4
A8WSZ5
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All DBs
Position
II:7750831..7752198
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AA seq
372 aa
AA seq
DB search
MFSTLNTSSKHNSIDLNNSQLSNVGTPLDQSTPAFLFGKRKATVPSTYTNSPLNTTSAPC
SDIFAVSSHAVPQHVKDTPGSKSVHWSPALVQSSDKQSTVSQSNASNMSFGGNSSFTTAP
VAKPPVQASSFGGQALNAPPLRSLRDKVEPAKKISRRNTFAARSTPLSTPNTQRVLSRPV
ESEEVQEEIDAADTWVTVFGFSPSQVSILLNLFSRHGEVVSHQAPTRGNFMHIRYSCITH
AQQALSRNGTLLDQDTFIGVVQCTNKDVINGTAAGIVARTSTTTAAANRSVSMYNSFAES
DAADQSAQFNENSVLNSSNVFDANNSMNSSRISVRSGVGMRPLAVEQRNNGTATRKAPDG
LLNKLWNTMGLN
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgttctccaccctaaacacgtcgtcaaaacacaattccatcgatttgaacaattctcag
ctgtccaacgttggaactcctctcgatcagtctacaccggcgtttctattcggaaaacga
aaagcaaccgttccatcgacatacacaaacagtccgctgaacactacttctgctccatgc
tcagatattttcgctgtttcttcgcacgctgtaccacagcatgtcaaagacactcccggt
tcgaaatcggtacactggtctccggctctcgtgcagtctagcgataagcaatctacagtt
tctcaaagcaacgcttctaatatgtcgttcggaggaaactcatcgttcaccacagcgcca
gtagctaagccaccagtgcaagcgtcgtcgttcggaggacaagcattgaatgctcctcca
cttcgatctctccgcgacaaagttgaaccagccaaaaaaatctcgcggaggaacacgttt
gctgccagatcgactccactgtcgacccccaacactcagcgcgtattgtcgcgtcctgtt
gaatctgaagaggtgcaggaagaaattgatgcagctgacacctgggttacagttttcgga
ttctctccaagtcaggtttcaattctattaaatctgttctcgcggcacggagaagtcgtc
agccatcaagcgccgaccagagggaacttcatgcatattcgttattcctgcattactcat
gctcaacaagctctctccagaaacggaactcttctcgatcaagacacattcattggtgtc
gttcaatgcaccaacaaagatgtcatcaatggtacagcagccggtattgttgctcgcact
tcaactactaccgcggctgctaatagatctgtgtccatgtataactcatttgctgagagt
gatgcggcggatcagtcagctcaattcaacgagaacagtgttctcaattcatcgaacgtg
tttgatgcgaacaactcaatgaactcttctcgcatttcagtccgctctggagttggcatg
cgcccattggcagttgaacagcggaacaatggaacagcgactcgaaaggccccagatgga
ttgctcaacaaactctggaacactatggggctcaactaa
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