Caenorhabditis briggsae (nematode): CBG_03125
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Entry
CBG_03125 CDS
T01054
Symbol
Cbr-patr-1
Name
(RefSeq) Protein CBR-PATR-1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBG_03125 (Cbr-patr-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_03125 (Cbr-patr-1)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CBG_03125 (Cbr-patr-1)
mRNA degradation factors
5'-3' decay
Decapping complex
CBG_03125 (Cbr-patr-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3689
Ribosomal_L18_c
Motif
Other DBs
NCBI-GeneID:
8572822
NCBI-ProteinID:
XP_045092117
WormBase:
CBG03125
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Position
II:complement(<7313961..>7316897)
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AA seq
864 aa
AA seq
DB search
MDEVKKYGKTLEEIEGELMFGKISFMLFLFHCIFSDDFPESLADSDEEHNIFDDEFDAAN
DETFGGGLDNIGENAEQVNCLVRAYHSLFFQTARLRLDDPVWHHPSSSDQVAPDASAIPF
PTFGNGDSSDTFKSSFEAESPFLKKSIWGNGADSSFNIWGSDFGIAAVPPSSSFDLDYNS
IAPNEAQQVSPLVQQKPSSQIPSMPSSALTVTCLLYHEFLNLISFKLEDFERMQLGDSTD
TLTAALNDLQLGSTNAQSKIEQAPTTLQSAPGEPLKAQTLPKLPVSALSLEELEQKIIRE
SQTVNVANTQQTPQGSNRFAHPPPGFTANMKNAQHPAMGPPMGMPGMQMPPPPMGYQQMG
AIMQELPRLPPLNPQYLPLVPIWLGAIVNNMQLPMGVPPIPPFLYQLLNHYRNPSLVHAM
IVHSSIPPNSRPNGPQFSGPQVGPHSPGARGQQRRNSGMPSTRTIYDLALDSFAGYMSFK
EREWLIRIQFVQCKGSGDPCIDDYYYVRWRESQIANGWTAHPKPESKQPLPASSESRKDY
LERIRRMNYREMQKERLRDREKERQRERQERIDRGEERKPRQTLTDKFATSLGLPSKSST
HNPRHVLDMKAQVDSVDNQAKKLSDEERKNAVQKKLRTMLLRLEGALVLLMEAEELRRTS
SSDKSQFKDLTSEEKEQEVEKRTSLIIDEFMGDDLPKLMQMSKGRAVLTRTLKVVGPRDQ
ARIILSLMIAAGLVSKKMYGEIVLDILPVVHQKVSNLHPDQFKYLVGALNLDNIKRQLMD
SNMFVRDVMLTLYLVSVKNNQNLLEWSKQTKFSSLKMPSSAPLGFWRKALSAVTDAEITE
FAEDIKYSGVVDCHEVAKLIEQSL
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagttaaaaagtatggtaaaactctcgaggagattgaaggagaattaatgttc
ggtaagatttcattcatgttgttcttgtttcattgcatattttcagacgatttccccgag
tccctagcagatagcgatgaagaacacaacatttttgacgatgagttcgatgccgccaac
gatgaaacattcggaggagggcttgacaacattggcgaaaacgcagagcaagtaaattgt
ttagtgcgagcatatcattctttattttttcagactgctcgtctccgactcgacgatcca
gtatggcatcatccatcatcatcagatcaagttgcaccagatgcatctgcaatccctttt
cccacctttggaaatggggacagcagcgacacgttcaaatcaagctttgaagctgaatct
ccattcttgaagaaatcaatctggggaaacggagcagacagttcttttaacatttgggga
tctgattttggtattgcggcagtacctccttcgtcgagtttcgatctagactataactct
atagctccaaacgaagctcaacaagtttcaccattggttcagcaaaaaccgtcatcgcaa
ataccatctatgcccagttctgcattaacggtaacgtgtttgttgtatcatgaatttctc
aatctgataagttttaagctggaagattttgagcgtatgcagttaggcgattctactgat
acattgacagccgccctcaatgatttacaacttggaagcaccaatgcacaatcaaaaatt
gaacaggcaccaactactctacagtcggcaccgggagaaccattgaaggctcagacgcta
ccaaaattgccggtttcggcactatcattagaagaacttgaacagaaaataattcgggag
tctcagaccgtgaatgtcgccaatactcagcaaacacctcagggaagtaacagatttgct
caccctccaccaggattcactgcgaatatgaaaaatgctcaacatcctgcaatgggacct
ccaatgggtatgccagggatgcaaatgcctccacctccaatgggataccaacagatggga
gcaattatgcaagagttgccgcggcttccaccattgaacccgcaatacctcccacttgtc
cctatttggctcggcgctatcgttaacaatatgcaactaccgatgggtgttccaccgatt
ccaccgtttctgtaccagctgttaaatcattatcgcaatccatcacttgtccatgctatg
atcgtccactcttctattccgccaaactcgagaccaaatggtcctcagtttagtggtcca
caagttggtcctcacagtccgggagcccgaggacagcaacgtagaaattcgggaatgcca
tcaactcgaaccatatacgacttagctctcgattctttcgctggctatatgtcttttaaa
gaacgagaatggctcatcagaattcaattcgtgcagtgcaaaggctccggtgatccatgc
atcgatgattactattatgtgagatggcgcgaaagtcaaatcgcgaatggctggacagct
caccccaaaccagaatcaaagcaacctttaccggcatcttctgaatcacgcaaagattat
ctcgaaagaatcagacgcatgaactatcgagaaatgcaaaaagaacggctacgagaccga
gagaaggagcgccagagagaaaggcaagaaagaatcgaccgcggagaagaaagaaaacct
cgccaaactcttactgataagtttgctaccagcttaggattaccatccaaatcgtctact
cacaacccacgacatgttttggatatgaaagctcaagttgatagcgtagataatcaagcc
aagaaattatcagatgaagaaagaaaaaatgccgtgcagaagaagcttcgaacgatgctt
ttgcgtttggaaggtgccctcgtgcttctaatggaagctgaagaattgcgcagaaccagt
tcttcggataagtcacaattcaaagatctaaccagcgaggagaaagaacaagaagttgaa
aaacgtacgtcactgatcatcgatgagtttatgggcgacgatttgcctaagctgatgcag
atgtcaaagggaagagctgtattaactagaacgctcaaagtcgtcggtccacgagatcag
gccagaatcatactgtctctaatgatagcggcaggactcgttagcaaaaagatgtacgga
gagatagttcttgacatcttgccagttgttcaccagaaagtttcaaatctacaccctgat
cagttcaagtatcttgtcggtgctttgaacttggacaacattaagagacagctcatggat
agtaatatgttcgttcgcgatgtgatgctgactctctacctcgtcagtgtgaagaacaac
cagaatctcctggaatggtccaaacaaacaaagttctcgagcctgaaaatgccgtcaagt
gcgccgttaggcttctggaggaaagcgttgagcgcagtcactgacgccgagattacagaa
ttcgctgaagatatcaaatactcgggagttgttgattgccacgaagtcgccaaacttatc
gagcaatctttataa
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