Caenorhabditis briggsae (nematode): CBG_03473
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Entry
CBG_03473 CDS
T01054
Symbol
Cbr-mtr-4
Name
(RefSeq) Protein CBR-MTR-4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBG_03473 (Cbr-mtr-4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_03473 (Cbr-mtr-4)
03041 Spliceosome [BR:
cbr03041
]
CBG_03473 (Cbr-mtr-4)
03009 Ribosome biogenesis [BR:
cbr03009
]
CBG_03473 (Cbr-mtr-4)
03016 Transfer RNA biogenesis [BR:
cbr03016
]
CBG_03473 (Cbr-mtr-4)
Enzymes [BR:
cbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CBG_03473 (Cbr-mtr-4)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CBG_03473 (Cbr-mtr-4)
Spliceosome [BR:
cbr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CBG_03473 (Cbr-mtr-4)
Complex C
U4/U6.U5 tri-SnRNP related factors
CBG_03473 (Cbr-mtr-4)
Ribosome biogenesis [BR:
cbr03009
]
Eukaryotic type
Pre-60S particles
Helicases
CBG_03473 (Cbr-mtr-4)
Transfer RNA biogenesis [BR:
cbr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CBG_03473 (Cbr-mtr-4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
PMBR
nSTAND3
Motif
Other DBs
NCBI-GeneID:
8575778
NCBI-ProteinID:
XP_002633782
WormBase:
CBG03473
UniProt:
A0AAE9AFM7
A8WV55
LinkDB
All DBs
Position
IV:complement(9950867..9954782)
Genome browser
AA seq
1024 aa
AA seq
DB search
MDFFDEMAGDGNDQAVEMEAAPVDPMKKLEEDKKRQARDQTKNLLADMKRDGGGVHFDEF
TAKRARTEEAKEDAVVERPMENIVVHTIQTNSENCTHEVAIPPNGEFTPLKESSIEPAKY
YPFQLDAFQKQAILCIENNESVLVSAHTSAGKTVVATYAIAQCLREKQRVIYTSPIKALS
NQKYRELEEEFKDVGLMTGDVTINPDASCLVMTTEILRSMLYRGSEIIKEVGWVVYDEIH
YMRDKERGVVWEETIILMSNHVKQAFLSATIPNAREFAQWVCSLKQQPVNVVYTDYRPTP
LQHFIYPVNGEGMYEVVNVKGEFREDKFRDAMSGLATAGDSAGSFNQRRSGKGTSGDSNV
LKIIRSVAANDGLNCIVFSFSRKECEAYALSLKDMDFNQPQEKLMVKSVYESAISQLSPE
DQNLPQITNILPILKRGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPAR
TVVFTSARKYDGTENRYISSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSAVDAKQIIKG
ATDPLNSQFRLTYNMVLNLMRVEGMAVSHIISSSFHQFQSYAKIPGIDKKCAEAEKKINS
FKFPWENEMRTYMDLVDHLARVKQEIVKTQREPRYIVGFLHAGRLLSIKSGDRDFKWGIL
HNFKKVVNPEDKNDSIFVCDMILAVEKNGKYDASNPATLLPGFDSRNRTWERVSMTLDKI
TAISAIRLKIPEVIDDSGKKRIDAAVKTAMERLGGEIPLLHPIDDMNIKTPEIKKLVDDE
KIYKERIENHTINKAADFEDRKKQFEKKLEAIKEFDALKAERKSLQSTLHLEELTNRKRV
LRRLEYLNADDSLQIKGKVACELSASDELILTEMILKGVFNPLDVAQTASLLSCFVFQDN
CAAPKLSAALQTCLTELHDQARHVAKVSNECKMEVIEDKYVNSFNPGLMDVVSQWVSGAS
FNDIVRTTDVFEGSIIRCLRRLEEVLREMINAAKALSNKELEQKFEDARKMLKRDIVFAA
SLYL
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggatttcttcgatgaaatggctggtgatgggaatgatcaagcggttgagatggaagca
gcgccagtggatccgatgaagaagctcgaagaagataaaaaacggcaagcccgagatcaa
actaaaaatctactggctgatatgaaaagagacggaggtggtgtacatttcgacgagttt
actgctaaacgagctcgaactgaggaagctaaagaggatgctgtcgttgagagaccgatg
gaaaatattgttgttcatacaatccagacgaacagcgaaaactgtacgcacgaagttgcc
ataccacctaatggcgaatttactccattaaaggagagttctattgaaccggcaaagtac
tatccattccaattggacgcattccagaagcaagcaattctatgcattgaaaacaacgaa
tcagttctcgtgtcggctcacacatctgctggtaaaactgtggttgcgacctatgcgatt
gcacaatgtctccgagagaaacagcgtgtgatttatacttctccaatcaaagcactctcc
aatcagaaatatagagagttggaagaagagttcaaagacgttggtcttatgacaggagat
gtcaccattaatccagatgcttcatgtcttgttatgactacagaaattctcagatccatg
ttatacagaggatcggagatcatcaaagaagttggttgggttgtttatgacgaaattcac
tacatgcgagataaagagcgcggagtagtttgggaagaaacaatcatcttgatgagcaac
catgtaaagcaagcgttcttgtccgctacaattccaaacgcaagagagtttgctcaatgg
gtctgcagtttaaaacaacaacctgtgaatgttgtctacacagattaccgtccaactcca
cttcagcatttcatttatccagtaaatggggaaggaatgtatgaagttgtcaatgttaag
ggtgaattccgtgaagacaagttccgcgatgctatgagtggtttggcaacagctggagac
tcagcgggaagcttcaatcaaagacgatctgggaaaggaacttctggagactccaacgtg
cttaaaattatccgatcagttgctgctaacgatggtctcaactgcatcgtgttctcattt
tcaagaaaagaatgcgaagcttatgcgctgagtctgaaagacatggattttaatcaacca
caagaaaagttgatggtaaaatcggtttatgaaagtgcgatttcacagctgtcaccagaa
gatcaaaatctgccgcagattacaaatattctcccaatcctcaaacgcggtattggagtt
catcactctggtttgatgccaatcttgaaagaaactatcgagattctgttcggcgaggga
cttgtgaaagttctttttgcaactgaaacattttcgatggggttgaacatgcctgctcgt
acagtagtcttcacctctgctcgaaaatatgatggtactgagaatcgttatatttcgtcc
ggagaatatattcaaatggctggaagagctggaagaagaggaaaagatgatagaggaacc
gttattctaatggtagactctgcgatgtctgcggttgatgccaagcaaattattaaggga
gcaacggatcctttaaactctcaattccgtctcacatacaacatggttctcaatctgatg
agagtggagggcatggctgtctcacatattatcagcagcagtttccatcaattccagagc
tacgcgaaaattccaggcatcgacaaaaagtgtgctgaagcagaaaagaaaatcaactcc
ttcaagttcccatgggaaaatgaaatgcgaacctatatggacctggtagatcatttagca
agagttaagcaggaaattgtcaagacccaacgggaacccagatatattgttggttttctc
cacgctggacgtcttctaagcatcaaatccggcgacagagatttcaagtggggtatccta
cataacttcaaaaaagttgtaaacccagaggacaaaaatgattcgatcttcgtttgtgat
atgattctcgctgtggaaaaaaacggcaagtatgatgcatcaaatcctgccactcttcta
ccaggtttcgattcgagaaatcgtacctgggaacgagtttcgatgacgcttgacaaaatt
actgctatctcagctattcgcctcaaaattccagaagtcattgatgattctggaaagaaa
cgcattgatgcggcggtgaaaactgccatggaacgattgggcggcgaaattccacttctt
catccaattgatgatatgaatatcaaaacaccggaaataaaaaaattggttgacgatgag
aaaatatataaagaacgaattgagaatcatacgattaataaggctgccgacttcgaggat
cgcaagaaacaatttgagaaaaaattggaagctatcaaagagtttgatgccttgaaagca
gagagaaagagtctccaaagtacattgcatttggaggaactcaccaacagaaaacgagtt
ctcagacgattggaataccttaatgctgatgattccctccaaatcaagggaaaagtcgct
tgtgagctttcggcatcggatgagttaattctgaccgaaatgattctgaaaggagtattc
aatccacttgacgtagcacaaactgcatctcttctctcatgtttcgttttccaagacaat
tgtgctgcacccaaactatctgctgcattacagacatgtttgaccgagctccatgatcaa
gctcgtcacgttgcaaaagtgtcaaatgaatgcaaaatggaagttatcgaggataaatat
gttaatagtttcaatccaggactgatggacgttgtctctcaatgggtgagcggagcatcg
ttcaatgatattgtcagaaccaccgacgtttttgaagggtcaatcattaggtgccttcgc
cgtttagaagaggttcttcgtgaaatgatcaacgcagcgaaagctctttccaacaaagag
ctagaacagaaattcgaagatgctcgaaagatgttgaagagagatatcgttttcgctgca
tctctttatctttaa
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