KEGG   Caenorhabditis briggsae (nematode): CBG_03654
Entry
CBG_03654         CDS       T01054                                 
Name
(RefSeq) Protein CBG03654
  KO
K03138  transcription initiation factor TFIIF subunit alpha
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CBG_03654
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbr03021]
    CBG_03654
Transcription machinery [BR:cbr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIF
     CBG_03654
SSDB
Motif
Pfam: TFIIF_alpha
Other DBs
NCBI-GeneID: 8572976
NCBI-ProteinID: XP_002629936
WormBase: CBG03654
UniProt: A8WVI8
LinkDB
Position
II:complement(2255729..2261928)
AA seq 483 aa
MTSKPEDVKSEINVRVAKRNDAVRYSVMSFNGMDKVDTSKWTMESGVTMEREDNQRVVMA
TQSVQEYGEGSEYGKAAREEARRKKFGRQSKSYKLDNQPWKLSFKEPEGRQRQMRGIREG
GANEHADYWVFMKPPGNFSEFKAYKVDEWHKFLPAITHKTLDIDQAEEQFSQRNKVMNQF
ALKAAIQNQLNAADEVEMSEQQKRLLKIKDEGSSDDSDDGDDEGEGGGEDGKKNNGKNKK
KKKKNVKPAKEKRQRVENSDDVAKYESSDGEDEGREYDYISDSGTDSDREQVPSDEKIEK
QLVGVAEEEGARKLFDTDSSESDDDLAKKLLNKDDKRKGGNDVEERDSSGSDSDDPDTEK
IESVVFLKANKDAEGSSSGGGKKRPLTEDSDVKVDGGSDAKKPKTAAKFEEGLNEETVRR
YLRRKPHTTKELLHKMNGKCGEMSKSEMVMKLATILKAIEPHQTRQLKGKKEVLFFSLAN
TVA
NT seq 1452 nt   +upstreamnt  +downstreamnt
atgacgtcaaaaccagaagacgtcaaaagcgaaatcaacgttcgtgtggcgaaacgaaac
gacgcggtacggtactcggtgatgagtttcaacggaatggacaaggtcgacacatcgaaa
tggacgatggagagcggggtgacgatggagcgagaggataatcagagagtcgtcatggcg
acacagtcggttcaggaatacggagaaggctcggagtacggtaaagcggcacgcgaagag
gcacgccgcaagaagttcggtcgccaatcgaaaagctacaaattggacaatcaaccatgg
aaactgtcattcaaagagcccgaaggccgtcaacgacaaatgcgcggaatccgagagggc
ggagccaacgagcacgccgactattgggtcttcatgaagccgccgggcaatttcagcgaa
ttcaaggcgtataaagtcgatgaatggcataaattcttgccggcaatcactcataaaacg
ctggatatcgatcaggctgaggagcagttctcgcagaggaataaggttatgaaccagttc
gcactgaaagcggctatacagaatcagctgaatgcggcggatgaggtggagatgtccgag
caacagaagagactgctgaagattaaggacgaaggaagctcggacgattcagatgacggt
gacgatgaaggagaaggtggtggtgaggatggaaagaagaataacggaaagaataagaag
aagaagaagaagaatgtgaagccggcgaaggagaagcgacagagagtcgagaatagtgac
gatgtggctaaatacgagtcatctgacggcgaggatgagggacgcgagtacgactacatt
tcggacagtggaaccgattctgaccgcgaacaagtcccatccgacgagaaaatcgagaag
caactcgtcggcgtcgccgaggaggagggcgctcgtaagctgttcgacacggattccagc
gagtcggacgacgacttggccaaaaaattgctgaacaaagacgacaaacgaaaaggaggg
aacgatgtcgaggagcgcgactcgtcgggatcggattccgacgatccggacaccgagaaa
attgaatctgtggtgtttttgaaggcgaacaaggatgcggagggaagctcgtcgggagga
ggcaagaaacgaccgttgacagaggattcagatgtgaaagtggacgggggaagtgatgcc
aaaaagccgaaaactgctgcgaaattcgaggaggggcttaacgaggagactgtgagaaga
tatcttcgtcgcaaaccacataccaccaaggaactgctccacaagatgaacggaaaatgc
ggtgaaatgagcaaatcggagatggtgatgaagttggcgacgatcctcaaagccatcgaa
ccccatcaaacacggcagctgaagggcaagaaggaggtgctgttcttctcgttggccaac
actgtcgcttga

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