Caenorhabditis briggsae (nematode): CBG_03684
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Entry
CBG_03684 CDS
T01054
Symbol
Cbr-toe-1
Name
(RefSeq) Protein CBR-TOE-1
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CBG_03684 (Cbr-toe-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cbr03009
]
CBG_03684 (Cbr-toe-1)
Ribosome biogenesis [BR:
cbr03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
CBG_03684 (Cbr-toe-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
U3snoRNP10
BP28CT
HEAT_DAAF5
TOR1L1_N
RNase_3_N
PHAX_RNA-bd
Cnd1
Motif
Other DBs
NCBI-GeneID:
8573093
NCBI-ProteinID:
XP_045092462
WormBase:
CBG03684
LinkDB
All DBs
Position
II:2457376..2467262
Genome browser
AA seq
1946 aa
AA seq
DB search
MATSLTSQLENLRTSAARHLTVEKRHVSLLFDRKEAGKLTNETAHRIGVAGLEQMKRIDP
IFDTEIANDLFSDERVDFVRSMLEKEANESLNKQIEKLLLELSPYLQHFACQQVLEYLVH
TYQIYSFNAETLLLTFLPFHETKVYSRLLRILDFDWTRSKEWQFMQQYLRSETPIPFSSI
SKATLASKHSIISCITDHIKKAVDIVGSDYLEIKHPSLFNFHAKLLLSMFNDPEKVDEMM
LAKLIPFIEHGIKSPMKSFRYSAMVVISQLVLTVKLKEDVLNSLCKLLITKMRSDTSTAS
LNTLMVVFQQQNVENLSKNTLKKLLRHDEDIDMWKALRDLSERTDTSKFYNILWKELVAL
SRDSESDEQQLAIDVLLETSDDASLLTSEQAKAFLKLILEEAMSGNLIDKKNKMKGNIRA
IGIRFAKQFDEIYEELKEKDKKALKRIVKEIELEDVVQMASEYIEVAPEAASEDVEEVPK
KVHKPLTATEKAAQLAANSEFSKREVFSGDPIKEAIKWIHQKKWEKVEWALNEMAQRGEK
YFGKKVADDVEEFVVEIVKICGNGEVKSNGNVDASSVKAALAGANLSPQFITSLLTKFDD
AAETAPKRAKGPAATKKNVVEKTFGNDESWDDFNGRVVFVLDLLNARQVIPSSDKVLAAI
FGIVKQTNSRSDAESSSYQQHLAVNAIRKILEHPGKTKIGSSEVDMDCVIETMRSTHNHH
LLRDCLRLIVAAAKHTPNSVVKHVMSVFTFMGNGMLRKDNELTLTIVEKTVESLFATIIN
SGGALGQVVLTKQQQTEKLIELARLFAASAVDIPAHRRARIAQAIARAVGSENASTVVLV
LVSSFCARWQRSTDAGAQEALKKGSDQEAYDDLAIELLSALNPFEQDHLKNQFLSKNSNF
PNFQLSSVLEMCEYVRRLGGDKAPTTPKSTITKKDLDTMIFDRTAQTLPRIRHFRYVVVT
LIARIFSNRVLIERLAAYDDEELLKNALPLGKRLIECSVELDEFANKEANAQDGSDPQAQ
RYWVAFASKTEIVSEKLRHLLPGGVAARLIADVLQECVNEKKLSYKMCEKVLQLANIKLG
HDGYLFSDSGINEKELITLAQALNKFIVAETKSEEKMRMCQNSAFTLKLIAKNLPSQSES
LVLADTMQRCVSIVSQYQKLDENLTGNVLLLAGEMIRSHNMRSTIHHASSLLKTCLATVQ
ECIQKFSKSSQFDSSAPSPGGSVAGGAGRANRGHRIRQQSLGGNKFGSDTLLICSLTCIQ
RVFDQFASFVVESTGDVVIRYCRLISRFGDPSELLSLNQPSSSSNAFQYDGGSQTSGFGS
KSGIHRRLSCIRRSLLSIEMRVLPAHIVKAVGELKSEKKALCALFNLLSGFIETQHQQKP
DALRKAVVQLRHTFVADIITPSLEFRSQQRQAEVRFVAFLGNLRDLKLSILKLMKLIILD
LPILELRILKLLEPRILELLNLRLPILELRVLDHRDLPILELLELLELLLLPIKGIMELL
ELSILMLSILELRILKLLEPRILELLNLRLPILELRVLDHRDLPILELLELLELLLLPIK
GIMELLELSILMLSILELRILGLLEPRILELPNLRIPILELLELPILELPILDLLILKLP
ILELLNSCDFCKLPILELLKLRILKLTILEILKLRILKLPILELPILELPILELLELLEF
PQFENVEKLEHTVFNFVVSIASILSEVEFRPVVNELVAWAEPGLESKADLASRLRLVSLL
HFANDLYTSFNSLALPYFGRILEVAVSVLKRCNATLLGAEELLLSGKRGSIEALETDLAL
TLAIDVISNAARHRDFFTIDRCQLVSDVIVDELVNTKVEGHEKRCSDHLVAAIYRIGNAD
PDNFPELLNKIMLKTRDSRPKIRYRTLIVLDLLIKEIGDGVQPHLSILLPFLNELIEDEN
KQVEAQCQKVINSLQHKFGETFWSGS
NT seq
5841 nt
NT seq
+upstream
nt +downstream
nt
atggctacttctttgacatcgcagttagaaaatctgcgaacatcggcggcacgtcatctg
accgtcgagaagcgtcatgtatcgttgctttttgatagaaaggaagctggaaagctcaca
aatgagaccgcacatcgaattggagtcgctggacttgagcaaatgaagcgaatcgatccc
attttcgataccgagattgccaacgacttgttttccgacgagcgtgtggattttgtcaga
tccatgctcgaaaaagaggccaacgagtcgctcaacaagcaaatcgagaagctcctccta
gaactttctccctatctccaacactttgcgtgccaacaagttctcgaatacctcgtccac
acctatcagatctattccttcaacgctgagacccttctgctcactttcctcccattccat
gagaccaaagtctattctcgtctcctcagaatcctggatttcgactggacacgctccaaa
gagtggcaattcatgcagcaatacctcagatccgagactccgatcccttttagctcaatt
tctaaggccacccttgccagcaagcactcgattatcagttgtatcactgatcatatcaag
aaggctgttgatattgttggaagtgattatttggagatcaaacatccctctctgtttaat
ttccatgccaaattgctgttgagcatgttcaatgacccggagaaggtcgatgagatgatg
ttggccaagttgatcccgttcattgagcatggaattaagagccccatgaaatcgttccgc
tactctgcaatggttgtgatctctcaactcgtcctaaccgtcaaactcaaagaagacgtc
ctcaactccctctgcaaattgctcatcaccaaaatgcgctccgacacttcaacggcttct
cttaacacccttatggtcgtttttcagcagcaaaacgtggaaaatctctcgaagaacact
ctgaaaaagttgctacgacacgatgaggatatcgatatgtggaaggcgttgagagatctg
tccgagagaacagatacttctaaattctataatatcctctggaaagagttggtggcgttg
tcaagagattctgaatctgatgagcaacaactggcaattgacgtgcttctggagaccagt
gacgatgcgagtcttctcacttccgagcaagcgaaggcgttcttgaagctgattctcgaa
gaggcgatgtccggaaatctaatcgacaagaagaacaaaatgaaggggaacattcgagct
atcggaattcgattcgcaaaacaattcgatgaaatttacgaggagcttaaggaaaaggat
aaaaaggcgttgaagagaatcgtcaaggagatagaacttgaagacgtggtccagatggca
tcggaatacatagaggtggctccagaagcagcttcagaagacgttgaagaggtccccaag
aaggttcataagcctctcacagctacggaaaaagctgcccagctagctgccaactcagaa
ttctcaaaacgcgaagtcttctctggcgatccgatcaaagaggcaatcaaatggattcat
cagaagaaatgggagaaagtcgagtgggcactcaatgaaatggcacagcgaggagagaaa
tatttcggaaagaaggttgcagatgacgtcgaggagtttgtcgtggagattgtcaagatt
tgtggaaacggagaagttaaaagcaatggaaatgtggatgcgagtagtgtgaaagcggca
ctggctggggccaatctctcgccacaattcatcacgagcctcctaacgaaattcgacgac
gccgctgagacggctccaaaacgtgccaaaggcccagcagcaacgaagaagaacgtcgtt
gagaagacgttcggaaacgatgaatcctgggacgacttcaacgggcgcgttgtgtttgtg
ctggatttgttgaacgctcgtcaagtgattccatcgagtgataaggtgttggcagcgatt
ttcggcattgttaagcaaaccaactctcgatccgacgccgagagctcatcctatcaacaa
catctcgctgtaaatgccattcgaaagatcttggagcacccaggaaagaccaaaatcggc
tcgtcagaagtggatatggattgtgtgatcgagacaatgagatccacccataaccatcat
ctccttcgtgactgccttcgtttaattgtggcagccgctaagcataccccgaactctgtc
gtcaaacatgtgatgtctgtgttcactttcatgggaaatggaatgctcagaaaggacaac
gagttgaccctcactatcgttgagaaaaccgtcgaatccctcttcgcaacgattatcaac
tcaggaggagctttaggacaagtcgtgctcaccaaacagcaacaaaccgagaaactcatc
gaactggctcgtctgttcgcagccagcgctgttgatattccagctcatcgtcgtgctcgg
attgctcaggctatcgcgagagcagtgggatctgagaatgcgtctaccgtagtcctggtg
ctggtctcgagcttctgcgctcgctggcaacgatctacggatgcgggagcacaggaggcg
ttgaagaaggggtcggaccaagaggcctatgatgacttggcgattgagttgctaagtgcg
ctgaatccattcgagcaggaccatctgaaaaatcaattcttgagcaaaaattcaaatttt
ccaaattttcagctctctagcgtgctggaaatgtgtgaatacgtgcgtcgtcttggaggc
gacaaagccccaacaactccaaaatccacaatcaccaagaaggatttggatacgatgatc
tttgacagaaccgcccaaacgcttccacgaatccgtcacttccgttatgtagtcgtcacg
ctgatcgccagaatcttctcgaatcgagtgctgatcgagcgattggcagcgtacgatgat
gaggagctgttgaagaatgcgttgccacttggcaagcgactaattgagtgctccgtggag
ttggatgaattcgctaacaaggaagccaatgctcaggatggctcggatcctcaagctcag
agatattgggtggcattcgcttcaaaaacagaaatcgtttctgaaaagctaagacacttg
ttgccaggaggagtggcggcgagattgatcgctgatgtgcttcaagaatgcgtcaatgag
aagaagctgagctataagatgtgtgagaaggttctgcagctggccaacatcaagctagga
cacgatggatacctgttcagtgatagtggaatcaacgagaaggagcttatcactctagca
caggctctaaacaaattcattgttgctgagacaaagagcgaggagaagatgagaatgtgt
cagaattcagcgttcaccttgaagcttatcgctaagaatcttccatctcaatcggaatcg
ttggttcttgctgacactatgcaacgctgcgtctccattgtctcacagtatcagaaactc
gatgagaatcttactggaaatgtgctcctgcttgctggagaaatgattcgatcgcataat
atgagatcaacgattcatcatgcttctagtcttctgaagacgtgcctcgctaccgttcag
gagtgtattcagaaattctcaaagtcgtcgcaattcgattcgagtgctccttcgccagga
ggatcggttgcaggaggtgctggaagagccaatcgaggacaccgaattcgacagcaatct
ttgggaggcaacaagtttggcagtgatacgttgttgatctgctctctgacatgcatccaa
cgcgtcttcgaccagttcgcatcgttcgtcgtcgaatccaccggcgacgttgtcatccgt
tattgccgtctcatttctcgatttggagatccatctgaattgctcagccttaatcaaccc
agctcatcaagcaacgccttccaatacgacggtggatcacaaaccagcggcttcggaagc
aaatccggcattcatcgtcggctatcgtgcatccgacgatctctattgtcgattgagatg
agagttttgccagctcatattgtcaaggccgttggagagttgaaatcggaaaagaaagcc
ctgtgcgctctgttcaacctgctctccggattcatcgagacccaacaccaacagaagccc
gacgctcttcgcaaggctgtcgtacaacttcgtcacacgttcgtcgccgacatcattacg
ccgtcattggaattcagaagtcagcagagacaagccgaggtgagatttgtagcattttta
gggaatctgagggatctgaagctgtcgattctgaagcttatgaaacttataattctggat
cttccgatcctggagcttcggattctgaagcttctggagcctcggattcttgagcttctc
aatctcaggcttccgatcctggagcttcgagttctggatcatcgggatcttccgattctg
gagctactggagcttctagagcttctgttgcttccgattaagggaattatggagcttctg
gaactttcaattctgatgctttcgattctggagcttcggattctgaagcttctggagcct
cggattcttgagcttctcaatctcaggcttccgatcctggagcttcgagttctggatcat
cgggatcttccgattctggagctactggagcttctagagcttctgttgcttccgattaag
ggaattatggagcttctggaactttcaattctgatgctttcgattctggagctccggatt
ctggggcttctggagcctcgaattcttgagcttcccaatcttaggattccgatattggag
cttctggagcttccaattctggagcttccgattctggatcttctgattctgaagcttccg
attctggagcttctgaactcctgtgacttctgtaagctccctatactggagcttttgaag
cttaggattctgaagcttacgattctggagattttgaagcttaggattctgaagcttccg
attctggagcttccgattcttgagcttccgattctggagctcctggaacttctggaattt
ccacaattcgaaaacgttgaaaaactggagcacaccgtcttcaacttcgtcgtctccatc
gcaagcatcctgtccgaagtggaattccgtcccgtcgtcaatgagcttgtcgcgtgggcg
gagccaggcctcgaatccaaggctgatctcgcctctcgtctgcgtctcgtatcccttctt
cactttgccaacgatctctacacctcgttcaactcactggctctaccatatttcggacgc
attctcgaggttgctgtgtccgttctgaagaggtgcaatgccacgttgttgggagccgag
gagctgttgttgagtggaaaacgtggatctatcgaagcgttggagaccgatttggcgttg
actctggcgattgatgtgatttcgaatgcggcaaggcatagggacttctttacgattgac
cgctgccaactggtctccgatgtgattgtcgacgaactggtcaacacgaaggtggaagga
cacgagaaacgatgctcggaccatttggtcgcagccatctaccgtattggaaatgctgat
ccggacaacttcccagaactgctcaacaagattatgctcaagactcgtgactctcgtcca
aagatccgctaccgtacactcattgttctggatttgctcatcaaggagattggagatggt
gtgcagccgcatctttcgattctgttgccattcttgaatgagttgattgaagacgagaac
aagcaagtggaagcacagtgccaaaaagtcatcaactcgcttcaacacaagtttggagag
acattctggagtggatcttaa
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integrated database retrieval system