KEGG   Caenorhabditis briggsae (nematode): CBG_03684
Entry
CBG_03684         CDS       T01054                                 
Symbol
Cbr-toe-1
Name
(RefSeq) Protein CBR-TOE-1
  KO
K14550  U3 small nucleolar RNA-associated protein 10
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    CBG_03684 (Cbr-toe-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cbr03009]
    CBG_03684 (Cbr-toe-1)
Ribosome biogenesis [BR:cbr03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    CBG_03684 (Cbr-toe-1)
SSDB
Motif
Pfam: U3snoRNP10 BP28CT HEAT_DAAF5 TOR1L1_N RNase_3_N PHAX_RNA-bd Cnd1
Other DBs
NCBI-GeneID: 8573093
NCBI-ProteinID: XP_045092462
WormBase: CBG03684
LinkDB
Position
II:2457376..2467262
AA seq 1946 aa
MATSLTSQLENLRTSAARHLTVEKRHVSLLFDRKEAGKLTNETAHRIGVAGLEQMKRIDP
IFDTEIANDLFSDERVDFVRSMLEKEANESLNKQIEKLLLELSPYLQHFACQQVLEYLVH
TYQIYSFNAETLLLTFLPFHETKVYSRLLRILDFDWTRSKEWQFMQQYLRSETPIPFSSI
SKATLASKHSIISCITDHIKKAVDIVGSDYLEIKHPSLFNFHAKLLLSMFNDPEKVDEMM
LAKLIPFIEHGIKSPMKSFRYSAMVVISQLVLTVKLKEDVLNSLCKLLITKMRSDTSTAS
LNTLMVVFQQQNVENLSKNTLKKLLRHDEDIDMWKALRDLSERTDTSKFYNILWKELVAL
SRDSESDEQQLAIDVLLETSDDASLLTSEQAKAFLKLILEEAMSGNLIDKKNKMKGNIRA
IGIRFAKQFDEIYEELKEKDKKALKRIVKEIELEDVVQMASEYIEVAPEAASEDVEEVPK
KVHKPLTATEKAAQLAANSEFSKREVFSGDPIKEAIKWIHQKKWEKVEWALNEMAQRGEK
YFGKKVADDVEEFVVEIVKICGNGEVKSNGNVDASSVKAALAGANLSPQFITSLLTKFDD
AAETAPKRAKGPAATKKNVVEKTFGNDESWDDFNGRVVFVLDLLNARQVIPSSDKVLAAI
FGIVKQTNSRSDAESSSYQQHLAVNAIRKILEHPGKTKIGSSEVDMDCVIETMRSTHNHH
LLRDCLRLIVAAAKHTPNSVVKHVMSVFTFMGNGMLRKDNELTLTIVEKTVESLFATIIN
SGGALGQVVLTKQQQTEKLIELARLFAASAVDIPAHRRARIAQAIARAVGSENASTVVLV
LVSSFCARWQRSTDAGAQEALKKGSDQEAYDDLAIELLSALNPFEQDHLKNQFLSKNSNF
PNFQLSSVLEMCEYVRRLGGDKAPTTPKSTITKKDLDTMIFDRTAQTLPRIRHFRYVVVT
LIARIFSNRVLIERLAAYDDEELLKNALPLGKRLIECSVELDEFANKEANAQDGSDPQAQ
RYWVAFASKTEIVSEKLRHLLPGGVAARLIADVLQECVNEKKLSYKMCEKVLQLANIKLG
HDGYLFSDSGINEKELITLAQALNKFIVAETKSEEKMRMCQNSAFTLKLIAKNLPSQSES
LVLADTMQRCVSIVSQYQKLDENLTGNVLLLAGEMIRSHNMRSTIHHASSLLKTCLATVQ
ECIQKFSKSSQFDSSAPSPGGSVAGGAGRANRGHRIRQQSLGGNKFGSDTLLICSLTCIQ
RVFDQFASFVVESTGDVVIRYCRLISRFGDPSELLSLNQPSSSSNAFQYDGGSQTSGFGS
KSGIHRRLSCIRRSLLSIEMRVLPAHIVKAVGELKSEKKALCALFNLLSGFIETQHQQKP
DALRKAVVQLRHTFVADIITPSLEFRSQQRQAEVRFVAFLGNLRDLKLSILKLMKLIILD
LPILELRILKLLEPRILELLNLRLPILELRVLDHRDLPILELLELLELLLLPIKGIMELL
ELSILMLSILELRILKLLEPRILELLNLRLPILELRVLDHRDLPILELLELLELLLLPIK
GIMELLELSILMLSILELRILGLLEPRILELPNLRIPILELLELPILELPILDLLILKLP
ILELLNSCDFCKLPILELLKLRILKLTILEILKLRILKLPILELPILELPILELLELLEF
PQFENVEKLEHTVFNFVVSIASILSEVEFRPVVNELVAWAEPGLESKADLASRLRLVSLL
HFANDLYTSFNSLALPYFGRILEVAVSVLKRCNATLLGAEELLLSGKRGSIEALETDLAL
TLAIDVISNAARHRDFFTIDRCQLVSDVIVDELVNTKVEGHEKRCSDHLVAAIYRIGNAD
PDNFPELLNKIMLKTRDSRPKIRYRTLIVLDLLIKEIGDGVQPHLSILLPFLNELIEDEN
KQVEAQCQKVINSLQHKFGETFWSGS
NT seq 5841 nt   +upstreamnt  +downstreamnt
atggctacttctttgacatcgcagttagaaaatctgcgaacatcggcggcacgtcatctg
accgtcgagaagcgtcatgtatcgttgctttttgatagaaaggaagctggaaagctcaca
aatgagaccgcacatcgaattggagtcgctggacttgagcaaatgaagcgaatcgatccc
attttcgataccgagattgccaacgacttgttttccgacgagcgtgtggattttgtcaga
tccatgctcgaaaaagaggccaacgagtcgctcaacaagcaaatcgagaagctcctccta
gaactttctccctatctccaacactttgcgtgccaacaagttctcgaatacctcgtccac
acctatcagatctattccttcaacgctgagacccttctgctcactttcctcccattccat
gagaccaaagtctattctcgtctcctcagaatcctggatttcgactggacacgctccaaa
gagtggcaattcatgcagcaatacctcagatccgagactccgatcccttttagctcaatt
tctaaggccacccttgccagcaagcactcgattatcagttgtatcactgatcatatcaag
aaggctgttgatattgttggaagtgattatttggagatcaaacatccctctctgtttaat
ttccatgccaaattgctgttgagcatgttcaatgacccggagaaggtcgatgagatgatg
ttggccaagttgatcccgttcattgagcatggaattaagagccccatgaaatcgttccgc
tactctgcaatggttgtgatctctcaactcgtcctaaccgtcaaactcaaagaagacgtc
ctcaactccctctgcaaattgctcatcaccaaaatgcgctccgacacttcaacggcttct
cttaacacccttatggtcgtttttcagcagcaaaacgtggaaaatctctcgaagaacact
ctgaaaaagttgctacgacacgatgaggatatcgatatgtggaaggcgttgagagatctg
tccgagagaacagatacttctaaattctataatatcctctggaaagagttggtggcgttg
tcaagagattctgaatctgatgagcaacaactggcaattgacgtgcttctggagaccagt
gacgatgcgagtcttctcacttccgagcaagcgaaggcgttcttgaagctgattctcgaa
gaggcgatgtccggaaatctaatcgacaagaagaacaaaatgaaggggaacattcgagct
atcggaattcgattcgcaaaacaattcgatgaaatttacgaggagcttaaggaaaaggat
aaaaaggcgttgaagagaatcgtcaaggagatagaacttgaagacgtggtccagatggca
tcggaatacatagaggtggctccagaagcagcttcagaagacgttgaagaggtccccaag
aaggttcataagcctctcacagctacggaaaaagctgcccagctagctgccaactcagaa
ttctcaaaacgcgaagtcttctctggcgatccgatcaaagaggcaatcaaatggattcat
cagaagaaatgggagaaagtcgagtgggcactcaatgaaatggcacagcgaggagagaaa
tatttcggaaagaaggttgcagatgacgtcgaggagtttgtcgtggagattgtcaagatt
tgtggaaacggagaagttaaaagcaatggaaatgtggatgcgagtagtgtgaaagcggca
ctggctggggccaatctctcgccacaattcatcacgagcctcctaacgaaattcgacgac
gccgctgagacggctccaaaacgtgccaaaggcccagcagcaacgaagaagaacgtcgtt
gagaagacgttcggaaacgatgaatcctgggacgacttcaacgggcgcgttgtgtttgtg
ctggatttgttgaacgctcgtcaagtgattccatcgagtgataaggtgttggcagcgatt
ttcggcattgttaagcaaaccaactctcgatccgacgccgagagctcatcctatcaacaa
catctcgctgtaaatgccattcgaaagatcttggagcacccaggaaagaccaaaatcggc
tcgtcagaagtggatatggattgtgtgatcgagacaatgagatccacccataaccatcat
ctccttcgtgactgccttcgtttaattgtggcagccgctaagcataccccgaactctgtc
gtcaaacatgtgatgtctgtgttcactttcatgggaaatggaatgctcagaaaggacaac
gagttgaccctcactatcgttgagaaaaccgtcgaatccctcttcgcaacgattatcaac
tcaggaggagctttaggacaagtcgtgctcaccaaacagcaacaaaccgagaaactcatc
gaactggctcgtctgttcgcagccagcgctgttgatattccagctcatcgtcgtgctcgg
attgctcaggctatcgcgagagcagtgggatctgagaatgcgtctaccgtagtcctggtg
ctggtctcgagcttctgcgctcgctggcaacgatctacggatgcgggagcacaggaggcg
ttgaagaaggggtcggaccaagaggcctatgatgacttggcgattgagttgctaagtgcg
ctgaatccattcgagcaggaccatctgaaaaatcaattcttgagcaaaaattcaaatttt
ccaaattttcagctctctagcgtgctggaaatgtgtgaatacgtgcgtcgtcttggaggc
gacaaagccccaacaactccaaaatccacaatcaccaagaaggatttggatacgatgatc
tttgacagaaccgcccaaacgcttccacgaatccgtcacttccgttatgtagtcgtcacg
ctgatcgccagaatcttctcgaatcgagtgctgatcgagcgattggcagcgtacgatgat
gaggagctgttgaagaatgcgttgccacttggcaagcgactaattgagtgctccgtggag
ttggatgaattcgctaacaaggaagccaatgctcaggatggctcggatcctcaagctcag
agatattgggtggcattcgcttcaaaaacagaaatcgtttctgaaaagctaagacacttg
ttgccaggaggagtggcggcgagattgatcgctgatgtgcttcaagaatgcgtcaatgag
aagaagctgagctataagatgtgtgagaaggttctgcagctggccaacatcaagctagga
cacgatggatacctgttcagtgatagtggaatcaacgagaaggagcttatcactctagca
caggctctaaacaaattcattgttgctgagacaaagagcgaggagaagatgagaatgtgt
cagaattcagcgttcaccttgaagcttatcgctaagaatcttccatctcaatcggaatcg
ttggttcttgctgacactatgcaacgctgcgtctccattgtctcacagtatcagaaactc
gatgagaatcttactggaaatgtgctcctgcttgctggagaaatgattcgatcgcataat
atgagatcaacgattcatcatgcttctagtcttctgaagacgtgcctcgctaccgttcag
gagtgtattcagaaattctcaaagtcgtcgcaattcgattcgagtgctccttcgccagga
ggatcggttgcaggaggtgctggaagagccaatcgaggacaccgaattcgacagcaatct
ttgggaggcaacaagtttggcagtgatacgttgttgatctgctctctgacatgcatccaa
cgcgtcttcgaccagttcgcatcgttcgtcgtcgaatccaccggcgacgttgtcatccgt
tattgccgtctcatttctcgatttggagatccatctgaattgctcagccttaatcaaccc
agctcatcaagcaacgccttccaatacgacggtggatcacaaaccagcggcttcggaagc
aaatccggcattcatcgtcggctatcgtgcatccgacgatctctattgtcgattgagatg
agagttttgccagctcatattgtcaaggccgttggagagttgaaatcggaaaagaaagcc
ctgtgcgctctgttcaacctgctctccggattcatcgagacccaacaccaacagaagccc
gacgctcttcgcaaggctgtcgtacaacttcgtcacacgttcgtcgccgacatcattacg
ccgtcattggaattcagaagtcagcagagacaagccgaggtgagatttgtagcattttta
gggaatctgagggatctgaagctgtcgattctgaagcttatgaaacttataattctggat
cttccgatcctggagcttcggattctgaagcttctggagcctcggattcttgagcttctc
aatctcaggcttccgatcctggagcttcgagttctggatcatcgggatcttccgattctg
gagctactggagcttctagagcttctgttgcttccgattaagggaattatggagcttctg
gaactttcaattctgatgctttcgattctggagcttcggattctgaagcttctggagcct
cggattcttgagcttctcaatctcaggcttccgatcctggagcttcgagttctggatcat
cgggatcttccgattctggagctactggagcttctagagcttctgttgcttccgattaag
ggaattatggagcttctggaactttcaattctgatgctttcgattctggagctccggatt
ctggggcttctggagcctcgaattcttgagcttcccaatcttaggattccgatattggag
cttctggagcttccaattctggagcttccgattctggatcttctgattctgaagcttccg
attctggagcttctgaactcctgtgacttctgtaagctccctatactggagcttttgaag
cttaggattctgaagcttacgattctggagattttgaagcttaggattctgaagcttccg
attctggagcttccgattcttgagcttccgattctggagctcctggaacttctggaattt
ccacaattcgaaaacgttgaaaaactggagcacaccgtcttcaacttcgtcgtctccatc
gcaagcatcctgtccgaagtggaattccgtcccgtcgtcaatgagcttgtcgcgtgggcg
gagccaggcctcgaatccaaggctgatctcgcctctcgtctgcgtctcgtatcccttctt
cactttgccaacgatctctacacctcgttcaactcactggctctaccatatttcggacgc
attctcgaggttgctgtgtccgttctgaagaggtgcaatgccacgttgttgggagccgag
gagctgttgttgagtggaaaacgtggatctatcgaagcgttggagaccgatttggcgttg
actctggcgattgatgtgatttcgaatgcggcaaggcatagggacttctttacgattgac
cgctgccaactggtctccgatgtgattgtcgacgaactggtcaacacgaaggtggaagga
cacgagaaacgatgctcggaccatttggtcgcagccatctaccgtattggaaatgctgat
ccggacaacttcccagaactgctcaacaagattatgctcaagactcgtgactctcgtcca
aagatccgctaccgtacactcattgttctggatttgctcatcaaggagattggagatggt
gtgcagccgcatctttcgattctgttgccattcttgaatgagttgattgaagacgagaac
aagcaagtggaagcacagtgccaaaaagtcatcaactcgcttcaacacaagtttggagag
acattctggagtggatcttaa

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