KEGG   Caenorhabditis briggsae (nematode): CBG_03710
Entry
CBG_03710         CDS       T01054                                 
Symbol
Cbr-lin-53
Name
(RefSeq) Protein CBR-LIN-53
  KO
K10752  histone-binding protein RBBP4
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03082  ATP-dependent chromatin remodeling
cbr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    CBG_03710 (Cbr-lin-53)
   03083 Polycomb repressive complex
    CBG_03710 (Cbr-lin-53)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cbr03036]
    CBG_03710 (Cbr-lin-53)
Chromosome and associated proteins [BR:cbr03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     CBG_03710 (Cbr-lin-53)
  Histone modification proteins
   HAT complexes
    HATB complex
     CBG_03710 (Cbr-lin-53)
   HDAC complexes
    Sin3A-HDAC complex
     CBG_03710 (Cbr-lin-53)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     CBG_03710 (Cbr-lin-53)
    PRC2.2
     CBG_03710 (Cbr-lin-53)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     CBG_03710 (Cbr-lin-53)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    CBG_03710 (Cbr-lin-53)
  Chromatin remodeling factors
   NuRD complex
    CBG_03710 (Cbr-lin-53)
   NuRF complex
    CBG_03710 (Cbr-lin-53)
   NuRF complex (fruit fly)
    CBG_03710 (Cbr-lin-53)
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz CAF1C_H4-bd WD40_Prp19 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd WD_LRWD1 ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_RIG_1st MIOS_WD40 NBCH_WD40 Beta-prop_DCAF4 Beta-prop_SCAP DUF6128
Other DBs
NCBI-GeneID: 68916498
NCBI-ProteinID: XP_045092470
WormBase: CBG03710
LinkDB
Position
I:5644514..5645855
AA seq 416 aa
MATIEDGTSEDRVANDEYKIWKKNTPFLYDLVMTHALEWPSLSVQWLPEIEKESSDHTVH
RLILGTHTSDEQNHLLISKICMPTDEAQFDASRYDTERGEFGGFGAVNGKVEPDIRINHE
GEVNRARYMPQKPTIIATKSPSADVYIFDYTKYPSVPKDNTFNPLLKLKGHTKEGYGLSW
NPNKEGLILSASDDQTVCHWDINGNAGANGELKAREIFKGHESVVEDVAWHVLHDGVFGS
VGDDKKLLIWDLRTNVPGHAIDAHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLRL
KLHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQTAEDAEDGPPELLF
IHGGHTAKISDFSWNPNEPWVVCSVSEDNILQVWQMADNIYNDVEDETPADMVERS
NT seq 1251 nt   +upstreamnt  +downstreamnt
atggcaaccatagaggatggtacctcggaggatcgtgtggccaatgatgaatacaaaatt
tggaagaaaaacactccgtttttgtatgatctcgttatgacgcacgcactcgaatggcca
tcgttgagcgtgcaatggcttccagaaatcgaaaaggaaagtagcgaccatactgttcat
agacttattctcggaacgcatacatcagatgagcaaaaccatcttttgatttcaaaaatc
tgcatgccaacagatgaagcgcaatttgatgcgtctcgttacgacaccgaacgcggtgag
ttcggaggtttcggagctgtgaacggaaaggttgaacctgatattcgtatcaatcacgag
ggagaagttaaccgtgctcgctacatgcctcaaaagccaaccattattgccacaaaatct
ccatctgccgatgtctatatcttcgattatacaaagtacccatctgttccaaaggacaac
actttcaatcctctgctcaaactcaaaggacatactaaagagggatacggattgtcatgg
aacccgaataaagaaggtctgattctttccgcttcagacgaccagactgtatgtcactgg
gatattaacggaaacgctggggcaaacggcgaattgaaagcgagagaaatcttcaagggg
cacgaatctgtcgttgaagacgttgcgtggcatgttttgcacgacggagtttttggttcg
gtcggagatgacaagaaattgctcatttgggatctgcgaaccaacgttccaggacatgca
atcgatgctcattcagccgaagttaattgccttgccttcaatccatactccgaattcata
ctagccactggttcagccgataaaactgtcgcgctttgggatctcaggaatctccgtctc
aagttacattcgttcgaatctcatcgcgacgaaatcttccaagttcaatggagcccgcat
aatgagaccatcctcgcatccagcggaactgacaaacgacttcatgtttgggacctgtcc
aaaatcggagaagatcaaactgctgaggatgctgaggatggaccacctgagctcctcttc
atccatggtgggcacactgccaaaatcagcgatttctcatggaaccctaacgaaccatgg
gtggtttgcagtgtttcggaagataacattttgcaagtttggcagatggctgacaacatt
tacaacgatgtcgaagacgaaactcccgccgatatggttgagcggtcttaa

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