KEGG   Caenorhabditis briggsae (nematode): CBG_03784
Entry
CBG_03784         CDS       T01054                                 
Symbol
Cbr-rae-1
Name
(RefSeq) Protein CBR-RAE-1
  KO
K14298  mRNA export factor
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CBG_03784 (Cbr-rae-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_03784 (Cbr-rae-1)
   03036 Chromosome and associated proteins [BR:cbr03036]
    CBG_03784 (Cbr-rae-1)
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     CBG_03784 (Cbr-rae-1)
Chromosome and associated proteins [BR:cbr03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    CBG_03784 (Cbr-rae-1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 Beta-prop_EML_2 WD40_Prp19 WDR55 Beta-prop_RIG_2nd WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_RSE1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WD40_Gbeta WD40_RFWD3 ANAPC4_WD40 Beta-prop_ACSF4 Beta-prop_Aladin Beta-prop_Nup120_160 Beta-prop_HPS5
Other DBs
NCBI-GeneID: 8581223
NCBI-ProteinID: XP_002639229
WormBase: CBG03784
UniProt: A0AAE9DUY7
LinkDB
Position
I:complement(5513517..5514766)
AA seq 372 aa
MFGATGFGNKSLFGGSNLSTTASTTATATQNDDFFVDGAPEDTIQVIKFSPQPQDKPMIA
CGAWDGTTRVWMLNDSNNFEGKAQQNIPAPILDICWTEDSSKIFLACADKEARLWDLASN
QVAVVGTHDGPVKTCHWINGNNYQCLMTGSFDKTLRFWDMKNLPNQTQMASLTLTERVYA
ADVLYPMAVVALANKRIKVFNLENGPSEVKDIESPLKFQIRCISIFRDKQNQNPAGFALG
SIEGRVAVQYVEAANPKDNFTFKCHRSADLVNGYQEIYAVNDICFHPQHGTLVTIGSDGR
YSMWDKDARTKLKTSEPHPMPLTCCDVHSSGALMVYALGYDWSRGHEGNTQPGSKIVIHK
CVDDMKPRVPKK
NT seq 1119 nt   +upstreamnt  +downstreamnt
atgttcggagcaacaggattcgggaacaaatcattgttcggcggatcgaatttgtctacg
actgcgagcaccacagcgacggctacacagaatgacgacttttttgttgatggtgctcca
gaagatacgattcaagtgataaaattcagcccccaaccacaagacaagcctatgatagca
tgtggagcttgggatggtacgactcgtgtttggatgctaaacgactcgaataattttgaa
ggaaaggctcagcaaaacattccagctccaattttagacatttgttggactgaggatagt
tcaaaaatcttcctcgcttgtgcagacaaagaagcccgtttatgggatctcgcctctaat
caagtcgcagtagttggaacacacgatggacctgtgaagacgtgccactggattaatgga
aacaattaccaatgcctcatgactggatcattcgacaaaacactccggttctgggacatg
aaaaacctaccaaaccaaacacaaatggcttcgctcacattaaccgagagagtttatgct
gcagatgtcctttacccaatggcagttgtagccctagcgaacaagcgtatcaaagttttc
aacctcgaaaacgggccatcagaagttaaagacattgaaagtccactcaaattccaaatc
agatgcatctcaatcttcagagacaaacagaatcagaacccagctggatttgctctcggc
tctatcgaaggccgtgtggccgtccagtacgttgaagctgcgaatccaaaagacaatttc
acttttaaatgccatcgatccgctgacctcgtcaacggatatcaagaaatctatgcggtt
aatgacatatgctttcatcctcagcacggaacactcgtgacaatcggatcagatggacga
tattccatgtgggacaaggacgctcgcacgaaactgaagacatcagaacctcatccgatg
ccattgacatgctgcgacgtgcatagttctggagcgctcatggtttacgctttgggatat
gattggagcagaggacacgaaggaaatacacaaccagggtcgaaaatcgttattcacaaa
tgtgtcgatgacatgaaaccaagagtcccgaagaagtga

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