KEGG   Caenorhabditis briggsae (nematode): CBG_04018
Entry
CBG_04018         CDS       T01054                                 
Name
(RefSeq) Protein CBG04018
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03013  Nucleocytoplasmic transport
cbr03015  mRNA surveillance pathway
cbr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CBG_04018
  09122 Translation
   03013 Nucleocytoplasmic transport
    CBG_04018
   03015 mRNA surveillance pathway
    CBG_04018
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_04018
   03041 Spliceosome [BR:cbr03041]
    CBG_04018
   03009 Ribosome biogenesis [BR:cbr03009]
    CBG_04018
   03012 Translation factors [BR:cbr03012]
    CBG_04018
Enzymes [BR:cbr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CBG_04018
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CBG_04018
   mRNA cycle factors
    Stress granule specific factors
     CBG_04018
Spliceosome [BR:cbr03041]
 Complex C
  Other components
   EJC/TREX
    CBG_04018
Ribosome biogenesis [BR:cbr03009]
 Eukaryotic type
  90S particles
   Helicases
    CBG_04018
Translation factors [BR:cbr03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    CBG_04018
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22 AAA_19 AAA_30
Other DBs
NCBI-GeneID: 8581418
NCBI-ProteinID: XP_002639425
WormBase: CBG04018
UniProt: A8WW00
LinkDB
Position
I:complement(4533012..4534301)
AA seq 393 aa
MSDGKKQEKSDMASVEFESSEEVNVVPTFDKMGLREELLRGIYAYGFEKPSAIQQRAIPA
ILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQIQKVVLALGD
YMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADE
MLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGI
KQFFVAVDREEWKFDTLIDLYDTLTSSSFLKVDWLTDKMKEANFTVSSMHGDMEQKDRDE
VMKEFRAGNTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI
NFVKQDDVRILRDIEQYYSTQIDEMPMNIADII
NT seq 1182 nt   +upstreamnt  +downstreamnt
atgtctgatgggaagaaacaagaaaagagtgacatggcgtcagtggaattcgagtcatca
gaagaagtgaatgtagttcccacttttgataagatggggctgcgggaagagctcctccgt
ggaatatacgcatacggattcgaaaagccgtctgcgatccaacagcgagcgattccagcc
attcttaaagctcgcgatgttattgcacaagctcagtcgggaacaggaaaaactgctacg
ttttcgatttctgttttacaatcactggatacacaagtcagagagactcaagctcttatt
ctttccccaaccagagaacttgcagttcaaattcaaaaggtggtcttggcacttggagac
tacatgaatgtgcaatgtcatgcttgcattggtggcaccaacttaggtgaagatatcaga
aagttggactatgggcagcatgtagtatctggtactcctggtcgagttttcgatatgatt
cgtcgtcgaaatctccgtacacgcgccataaagcttttggttctcgatgaagctgatgaa
atgctgaataaaggattcaaagaacaactgtatgacatctacagatatcttcctccagga
gctcaagttgttctactttctgctactctccctcatgaaattctcgaaatgacgagtaaa
ttcatgacagacccaattcgaatcctagtcaaacgcgacgagctcactctcgaaggtatc
aagcagttctttgtggctgttgatcgagaagaatggaagttcgatactctcatcgatctc
tacgatacattaacaagcagttcttttttgaaagtcgactggttaacggacaaaatgaaa
gaagctaacttcacagtttcttctatgcatggagatatggaacagaaagatcgggatgaa
gttatgaaagagttccgtgctggaaacacgcgagtcttgatatcaactgatgtttgggct
cgaggattggacgtcccacaagtttcactggtcatcaactacgatcttccaaacaatcgt
gaattgtatatccatcgtattggccgttcaggacgtttcggacgcaaaggagttgcaatc
aactttgtaaaacaagatgatgtcagaattttacgcgacatcgagcaatactactcaacc
caaatcgacgaaatgccgatgaacatcgcggatattatctga

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