Caenorhabditis briggsae (nematode): CBG_04082
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Entry
CBG_04082 CDS
T01054
Name
(RefSeq) Protein CBG04082
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbr03041
]
CBG_04082
Enzymes [BR:
cbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CBG_04082
Spliceosome [BR:
cbr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CBG_04082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pkinase
DEAD
R3H
Helicase_C
HA2_C
AAA_19
HA2_N
PK_Tyr_Ser-Thr
AAA_22
ATPase
AAA_11
AAA_14
nSTAND3
DUF5321
Motif
Other DBs
NCBI-GeneID:
8581477
NCBI-ProteinID:
XP_002639484
WormBase:
CBG04082
UniProt:
A8WW62
LinkDB
All DBs
Position
I:complement(4308301..4315311)
Genome browser
AA seq
1269 aa
AA seq
DB search
MHITLDVMSREQRKVMHEVAQHNGLSTRSTGKEPNRCIILSYLLKSIDDNEVVIISGGTG
CGKTTQVPQFILDDAAEKKKKVRIMVTQPRRLAAISISERVAKERGESLGHTVGYKIRLE
NRSSEKTLLTYCTTGVLLRMLTSDPIASGITHIIMDEIHEREINTDYLLIALRECLKHRK
DLKVILMSATIEGNMQLFSSYFQNQSVDVLRIESRTFDVKTFYIDQILAMSGYQPPEHQV
FFSGVEFKTEEWEEEIKEIQKEDKRSNNSETKNGSVATNTQIKKTSGSNTCAEGVVNQQR
GINSVTTAVGNKWSSGQYTCSDGEIIDEKTMGLFFKSTGCPKIPALTVEFLPDSRDSVYV
NGVRYNTDKTQSQVLLEKQKLDRNSMPEYPVMYRLDETHSTSRLAIPEPTTLCSESVQIT
QELFADASPTSIEKTNTPSTASSGLAKFSTDDFGKFGEKQRISQMLEQRFRSELKSVIPQ
RTSHYDTDMDKLVERIDFAKLRFAEKYDMFYGTDFENSIDHHLLDHVIQYLADSPVFGTI
LVFLPGFDDIQLMMGKIDKWKLGLKNMKHVSVIPLHSQMHSINHSDVFKPVTSDIRKIIL
ATNIAEASITIEDVIFVVDTGKVKEKSYNHEAKLSTLSVKPIARSNAEQRSGRAGRVRNG
YCIRLYSEAKFNSMPETQMAEMKRAAIYDVTLHAKIFAPNCMKISEFLALAPEPPEEKSI
IQSMAFLEQLGAFYRPNNDSGQNEDENENEETTEEVDPELTDLGRLMARLPLDPQLSRML
LFGLSLKCLAPIVNLVALLASREPYVLAQSDERERQSKMKFEMAEQDFSDHLMYIRLCTA
FCSKVTYKEQNDFCREHLLNLATMKMVQGTRHQLLQELVRAKVIVAPEKDIMMLLSDSNY
NAHSNSWTMVQAAIAAGCYPSIGVSTADSNLKKVQTLNVSHDIRSIALNEDCNCDPSSYG
SNFHWSNQNQASNQYVNRNQRNNSTAQPTKTLNSDSHFTARIPPENGYLPNINTSNHQQI
TSSIGNSVPETQSAASSSIYHHHDQNWTSNPHSYHTNEYGYDYGSNSVYQYGGNQQLGNA
QQYTSFNSSNPGSFMSSMGGYTPRGGRGRTGNCSKPENLFVDQNDCLRIGDFGLARFSDP
DVAMTPESVSLWYRPIEILLGATNHTTAVDIWSAGINKIIKVLGKPTTDEWPTLNDLPAM
QYVTLDGSDTTNFEQAVPQASEKSLNIIRNMIRFDPTRRFTATQLLQHDYFGSEDSSIRN
TSMDDPEFP
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgcacataacgctagatgtgatgtctcgagaacaaagaaaagtgatgcatgaagtcgct
caacataacggactatccacaagaagtacaggaaaagaaccgaaccgctgcataattcta
tcatatcttttgaaatctattgatgataacgaagttgtcatcatcagcggaggcactgga
tgtggaaagacaactcaagttcctcagttcattctggacgatgcagctgaaaagaagaag
aaagttcgcattatggtgacacaaccacgacgtcttgcggctatttccatttcggagcgt
gtcgccaaagaacgaggtgaatctctcggccatacagtcggctacaagattcggctagag
aacagatcgtcagaaaagacgcttctcacgtattgcacaactggagttcttcttcgtatg
ctcacatcggatcccatcgcttctggaataacccacatcattatggacgaaattcatgag
cgagaaattaatacggactatctgctcatcgctttgcgtgaatgtctcaagcatcgaaaa
gatcttaaagtgattcttatgtcggcgacgattgagggaaacatgcagttgttttcgagt
tatttccaaaatcaaagtgttgatgttcttcgtatcgaatctcgcactttcgatgtgaag
acgttctacatcgatcagattcttgctatgtctggatatcagcctcccgaacatcaggtt
ttcttctcaggagttgagtttaaaacagaagaatgggaagaagaaatcaaggagatacaa
aaggaagataaaagatccaacaattctgaaacgaaaaacggctcagttgcaaccaacact
cagattaagaagacttctggaagcaatacctgcgctgagggtgtcgtcaatcagcagcgt
ggcatcaattcagttaccactgcagtcggaaacaaatggtcctcaggtcaatatacatgt
tccgatggtgaaataattgatgagaaaacgatgggactgtttttcaaatccacaggatgt
cctaaaatacctgcattaactgtagaatttttgccggacagtcgagattcagtatacgtg
aacggcgttaggtacaatacggataaaacccagtcgcaagttttgttggagaaacagaaa
ttggatcggaattcaatgcctgaatatccagtgatgtaccgtctagatgaaactcattca
acttctcgtcttgcaattcctgagccaactacactgtgttctgaaagtgtccaaatcacc
caagaactatttgcggatgcatctccaacctctatcgaaaaaaccaacacgccgtcaact
gcgtccagtggccttgcaaagttttctactgacgatttcggtaaatttggagagaagcag
cgtatatcgcagatgctggagcagcgattccgttcagagctcaaatctgtgattccacaa
agaacgtcacactatgatacagatatggataaattagttgaacgtatcgatttcgccaag
cttcgcttcgctgaaaaatatgacatgttttatggaacagactttgagaactctatcgat
caccatcttctggatcacgtcatacagtatctggcggacagtccggtctttggaacaatc
ttggtttttctacctggttttgatgatattcagcttatgatgggcaaaatcgacaaatgg
aagcttggtttaaagaatatgaaacatgtatccgttattccgcttcattcacagatgcat
agtatcaatcattcggacgtcttcaaaccagttaccagtgatattcgaaagattattctt
gcaaccaacattgcagaagcatctatcaccattgaagacgtcatctttgttgtagatact
ggtaaagtaaaagagaagtcgtacaatcacgaagctaaactgagtacgctatctgttaaa
cccattgctagaagcaacgcagagcagcgatcaggacgagcaggaagagtaagaaatggt
tactgtattcgactttattcggaagccaaattcaattcgatgccagagacacaaatggct
gaaatgaaacgagcggctatttacgatgtgacacttcatgcgaaaatttttgctccaaat
tgcatgaaaatctctgagtttttggcattggcaccggaaccaccagaggaaaagtcgatt
attcaatcaatggcgtttttggagcaacttggcgcattctacagaccaaataatgattct
ggtcaaaacgaagatgaaaatgaaaatgaagaaaccaccgaagaagtggatcctgagttg
actgatttaggacgattaatggctcgactcccattggatcctcaactttctcgaatgttg
ctgttcggtttgtcactgaaatgtctcgctccaattgttaatttagttgccttgctagct
tcaagagagccatatgttcttgcccagtcggatgaacgcgagaggcaatcaaaaatgaag
tttgaaatggctgagcaggatttctctgatcaccttatgtacattcgattgtgtaccgca
ttttgctcgaaagtcacatataaggaacagaacgacttctgtcgtgaacatctcctcaat
ttggccacaatgaaaatggtccaaggaactcgtcaccagctacttcaagaactggttcga
gccaaagtgattgttgcaccagagaaggatataatgatgcttctctccgattcaaactac
aacgcccattcaaacagttggacgatggttcaagctgccatcgcagctggttgttatcca
tctattggtgttagtactgctgattcgaacttgaaaaaagtacaaacattaaatgtgtct
catgacatccgatcaatcgctctcaatgaagactgtaactgcgatcccagctcttacggc
tctaattttcactggtccaatcagaatcaagcttccaaccaatatgttaatcggaatcag
aggaataattctacggcacagcctacaaaaactttgaattctgactcccatttcactgcc
agaattcctcctgaaaacggatatcttccaaacattaatacatcgaatcatcaacaaatc
accagctcgattggaaattcggtacctgaaactcaatctgccgcatcatcttcgatctat
caccatcatgatcaaaactggacatcaaatccacattcataccatacaaacgaatatgga
tatgattacggaagcaacagtgtgtatcaatatggaggaaatcaacagcttggaaatgca
cagcaatatacctcgtttaattcgtcaaacccaggttcatttatgtcatcgatgggagga
tacactccaagaggaggaaggggaagaacgggaaactgctcgaagccggaaaatctcttc
gtggatcaaaacgattgtttacgaattggtgattttggtttggctagattttcagatccc
gatgtagcaatgaccccagaatcagtcagtctttggtatcgcccaatcgagattctccta
ggagcaaccaatcacacgacggccgttgatatttggtcggctggaattaataaaataata
aaggttcttggaaagcctacaactgatgaatggccaactctaaatgatcttccggcaatg
caatacgtcacacttgacggttcagacactaccaatttcgaacaagccgttccgcaagct
tctgaaaaatctctcaatatcattcgaaacatgatacgattcgatccaacgcgccgtttc
actgctactcaacttcttcagcatgattacttcggcagtgaggattcgtcaataaggaat
acgagcatggatgatccagaatttccataa
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