Caenorhabditis briggsae (nematode): CBG_04087
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Entry
CBG_04087 CDS
T01054
Symbol
Cbr-npp-2
Name
(RefSeq) Protein CBR-NPP-2
KO
K14304
nuclear pore complex protein Nup85
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CBG_04087 (Cbr-npp-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_04087 (Cbr-npp-2)
03036 Chromosome and associated proteins [BR:
cbr03036
]
CBG_04087 (Cbr-npp-2)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
CBG_04087 (Cbr-npp-2)
Chromosome and associated proteins [BR:
cbr03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
CBG_04087 (Cbr-npp-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleopor_Nup85
Phage_lysozyme
Serum_albumin
Motif
Other DBs
NCBI-GeneID:
8581481
NCBI-ProteinID:
XP_045092581
WormBase:
CBG04087
LinkDB
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Position
I:complement(4281212..4283235)
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AA seq
614 aa
AA seq
DB search
MTDVGRRYGVAISDSSTVFAYLTDKKDAKKKGLSIFIILFQCINLGDMNIVLVENVSQKR
QILATPNIRRLVIEMYSVFDKCQKGSSPDRCLDTATSCTFSRAYRSVLYNAAIAHSGTDF
MTDFALWSLYEKLWFGRGDSSICADMVSWANETFTFSKEAMDTAADDLTPGKAPSEEFWR
GVAITLLSSNFNDCIELLVLLGKNPELEAFIDVLSFFNPENLSDEALSDTVNEWKDLMRE
NLASGKYGNNENLKYLTKLLLGDDRYLQSVAPRVLQHWWHFLPFFVLVKNPFAGHAELMD
LAIECRSWFVGEEEENAREKDVFWCLIAKDDNNFLQLISSNPWLAVHLVDLIQKSTLDPE
FEVMRRMQMLDYASVLISHSPLWEIGFGYLIACGTEGLLRLESHIEGMHIEDDEMAEQLL
EICESNRLEDSKSCVTNTMTIRYLKQNEWSAALSWALKTGSKKTIDWTVSRIVSSSSKDE
LAALRVLSSITNNSVLSLPSLTFLYSYQRFVKMMHSGDVLDCVQNLIPLIMMPDVPTQYY
YDLFGYLITIIKEDGRTGIPFSKEILYELSTFLSTFTLDKSRTLNDSYMRKVKTLKKMVL
LKLADSVAKGIGCT
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgttggtcgcagatacggtgtggctatcagcgactcttcaacagtttttgct
tatttaaccgataaaaaagatgccaagaaaaaaggtttgtccattttcataattctgttt
caatgtataaatttaggtgatatgaatatcgtcctggtagagaatgtatcacagaaaaga
caaattttggccacaccgaacatcagaaggctggtcatcgagatgtattccgttttcgac
aaatgccagaaaggttcatcacccgacagatgtcttgatacggcgacttcttgtacattt
tctcgagcatatagatctgttctctacaatgcagcgattgcacattccggtacagatttc
atgacagatttcgcactctggtcactgtatgaaaaactttggtttggaagaggtgacagt
tcaatatgtgctgatatggtttcttgggccaacgaaactttcacgttctctaaagaagct
atggatacagctgctgatgatctaacaccaggaaaagctccttcagaagaattctggaga
ggtgtcgctatcacacttctaagcagcaatttcaatgactgcatagagcttttagttctt
cttggaaaaaatccagagttggaggcttttattgatgtactctcttttttcaatccggaa
aatttatcagacgaggctctatcagataccgtaaacgagtggaaagatctaatgagggaa
aacttagccagcggaaaatacggaaacaacgagaatctcaaatatctcacaaaactgctt
ctcggggatgatcgttatttgcaatcggtagcgcctcgagttcttcaacactggtggcat
tttctaccgttctttgtactcgtaaagaatccgtttgctggacatgccgagctcatggat
ttggctattgagtgtcggtcgtggttcgttggagaagaggaggaaaatgctagagaaaag
gatgttttctggtgtcttatagctaaagacgacaacaatttcctacagctaatctcttcg
aatccatggttggcagtccatctcgtggatcttattcaaaagtcaactcttgatcctgag
tttgaggttatgagaagaatgcaaatgctcgactacgcaagtgtgttgatttcacattca
ccactatgggaaatcggattcggatatcttatcgcctgtgggacagagggacttcttcgt
ttggagtctcatatcgaagggatgcatattgaagacgacgaaatggctgaacaacttctt
gaaatttgcgaatcgaatcgtttagaagattcaaaaagctgcgtaaccaatacgatgacg
attcgttatttgaagcagaatgaatggagtgctgcactttcatgggctctcaaaaccggt
tccaaaaaaacaatcgactggactgtatcacgtatagtcagttcaagttcgaaagacgaa
ttggccgctcttcgagtgttgtcatcaataaccaataactcggttctgtctctcccatca
ttgaccttcctctattcgtaccaaagatttgtcaaaatgatgcatagtggagatgttctg
gattgtgttcaaaatctaattccacttattatgatgcctgatgtgccaactcagtactac
tacgatcttttcggctatttgatcaccattatcaaagaagacggacggactgggatccca
ttctctaaagaaatcctctatgaactttcgacatttctctccacattcacactcgataag
agcagaacattgaacgatagctacatgagaaaggtgaaaactctcaagaaaatggtcctt
ctgaagcttgcggattcggtggcaaaaggaattggttgtacttga
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