KEGG   Caenorhabditis briggsae (nematode): CBG_04223
Entry
CBG_04223         CDS       T01054                                 
Name
(RefSeq) Protein CBG04223
  KO
K05236  coatomer subunit alpha
Organism
cbr  Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cbr04131]
    CBG_04223
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cbr04147]
    CBG_04223
Membrane trafficking [BR:cbr04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    CBG_04223
Exosome [BR:cbr04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   CBG_04223
  Exosomal proteins of bladder cancer cells
   CBG_04223
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 WD40_WDHD1_1st WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz TPR_COPA_B Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 WD40_Gbeta EIF3I Beta-prop_TEP1_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_WDR41 WD40_RFWD3 ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_Aladin NBCH_WD40 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 8581578
NCBI-ProteinID: XP_002639585
WormBase: CBG04223
UniProt: A8WWG3
LinkDB
Position
I:complement(3993846..3997866)
AA seq 1230 aa
MSLLIKFESKSARVKGISFHPTRPWVLTSLHSGVIQLWDYRMCVLLDKFDEHDGPVRGIC
FHHDQPIFVSGGDDYKIKVWNYKQKRCIFTLLGHLDYIRTTFFHNKYPWIISASDDQTVR
IWNWQSRNSIAILTGHNHYVMCAQFHPTEDLVASASLDQTVRIWDISGLRKKQMPGGGAP
RQTGAQQAELFGQPDAVVKLVLEGHDRGVNWVAFHHANPILVSGSDDRQVKIWRYNETKA
WELDSCRGHYNNVSSVIFHPNADLILSNSEDKSIRVWDMQKRTSLHVFRHENERFWVLAA
HPSLNMFAAGHDNGMVVFKIQRERPAYCVNDNLVFYVKGQQIRKLDLTTNKDVALCKLRH
PQPFMQPYYSLSFNPAEGTFLLTSRTHNKDLCAFELYKVASNSDGTVEAACVKSTGINAL
WVARNRFAVLDKAQNVSLRDLTNKELRKLENINTAVDDIFYSGTGMLLLRNDDGLQLFDV
QQKIVTASVKVSKVRYVIWNKSMEYAALLSKHTLTLVNRKLEILCTQQESTRVKSGAWDD
DAVFLYTTSNHIKYAISSGDCGIVRTLDLPLYILAIRGNVLYCLNREATPVEVPIDNSDF
KFKLALINKRIDEVLNMVRSANLVGQSIIGYLEKKGYPEIALHFVKDEKTRFGLAIECGN
LQIALEAAKKLDEPAVWEALGETALLQGNHQIVEMSYQRTKNFEKLAFLYFVTGNTDKLV
KMMKIAQARNDAHGQFQTALYVGDVEERIKVLRSCGQTSLAYLAAATHGYSAEAEELKSE
LESRQQPIPPVDSNARLLVPPPPVARLEENWPLLASAGAFDAQLIGLGGQLAPNRAAGVK
TTVPAFAAMEDDDADVGNDAWGDDEYLVGDDGELEVDEGEGPIDVDEEGGWDVDDDLALP
DIPDDQGGDDSEEVVPNPAPAVSSEWPNVSRLPVDHVAAGSFETAVKILRDTIGVVDHKP
FKDVFMKAYAVSRLSHRGWGGSEPAGPIFIHPLRNYQEDKNHLPIAAFKLSQLEKKLQKA
YQLTTNGKFGDAVVKLREILLSIPLLVVSSKKEVAEAEQLIAITREYLAALLLETYRKDL
PKTNMEDAKRNAELAAYFTHFDLQPLHRILTLRSAVNTFFKMKQMKTCASLCKRLLEVGP
RPEIATQIRKVLAAAERDNTDAHQLSYDEHNPFVVCSRQFVPLYRGRPMCKCPYCGASYS
EGLEGEVCNVCQVAEIGKNVVGLRISTLKN
NT seq 3693 nt   +upstreamnt  +downstreamnt
atgtcgctcctcatcaaatttgagtcaaaatctgcgagagtgaaaggaatttccttccac
ccaactcgcccatgggttttgacttctcttcacagtggagtcattcaactctgggactat
cgcatgtgtgttttgctcgacaagttcgacgagcatgatggacctgtaagaggaatctgc
ttccatcacgatcagccaattttcgtgtccggaggtgatgactacaaaatcaaagtatgg
aactacaaacagaaaagatgtatcttcactcttctcggtcatcttgattatattcgaacc
acattcttccataacaaatatccatggattatttctgcatccgacgatcaaacggttcga
atttggaattggcagagccgaaactcgattgccattcttactggacacaaccactatgtc
atgtgtgctcaattccacccaacagaagatcttgttgcttccgcatctctggatcaaact
gttcgcatctgggatatttcgggactccgaaaaaaacaaatgccaggaggaggagcacct
cgtcaaactggagctcaacaggcagagctttttggtcaaccagacgccgttgttaaactt
gttctagaaggtcatgatcgcggagtcaattgggtggctttccaccatgctaatccaatt
ttagtttccggatcggatgatcgtcaagttaaaatttggcggtacaatgaaaccaaagcc
tgggaattagactcatgtcgaggacactacaacaacgtttcttctgttattttccaccca
aatgctgacttgattctttccaattccgaggacaagtctattagagtctgggatatgcaa
aagcggaccagccttcatgttttccgccatgaaaacgaacgattctgggtattggctgct
catccaagcctcaacatgtttgctgctggtcatgacaatggaatggtcgttttcaagatt
cagagagaacgtccagcttattgcgttaatgacaatttggtgttctatgtgaaaggccaa
cagatcagaaaacttgacctgacaaccaacaaagatgtagccctatgcaaactccgtcac
ccacaaccattcatgcagccatactactctctgtcgtttaatcctgcggaagggacattc
cttctaaccagtcgcactcacaacaaagatctctgtgctttcgaactctacaaagtcgcc
agcaattctgatggaactgtcgaagcagcatgcgtgaagagtaccggaatcaacgcgcta
tgggtagcccgcaaccggtttgctgtccttgacaaagctcaaaatgtatcactccgggac
ttgaccaacaaggaactcagaaaacttgagaacatcaacacagctgttgatgacattttc
tattctggaacgggaatgcttcttttgcgtaacgacgatgggcttcagctatttgatgtg
caacaaaaaattgtgactgcctccgtgaaggtttcgaaagttcgctatgtgatctggaac
aaatctatggaatacgctgcgcttctttcgaagcacacattgacgttggtgaatcgcaag
ctggaaattttgtgcacacaacaagagtctactagagtcaagagtggagcttgggatgac
gatgcagtgtttttgtatactaccagtaaccacatcaaatatgctatcagttctggagac
tgtggaatcgttcgcactcttgatctccctctatacattttggctatccgtggaaacgtt
ctctactgcttgaaccgtgaagctacacctgtagaagttccaattgacaattcggacttt
aaattcaaattggcattgatcaataagcggattgatgaagttctcaatatggttcgttct
gcaaatttggtcggacaatcgatcattggatatctcgagaagaaaggctatccagaaatt
gctctacatttcgtgaaagatgaaaagacgcgtttcggcttagctatcgaatgcgggaac
cttcaaattgcattggaggccgctaagaagcttgacgagcctgctgtttgggaagctctt
ggagaaactgctcttctacaaggaaatcatcagattgtggagatgagttatcagagaaca
aagaatttcgagaagctggcgttcttgtattttgtcactggaaacaccgataagcttgtt
aagatgatgaaaatcgctcaggctcgtaacgatgctcacggacagttccagacagctttg
tacgttggtgatgttgaagagagaatcaaagttcttcgcagctgtggtcaaacctctctt
gcgtatctcgcagctgctactcatggatattcggcagaagcagaggagttgaaatctgaa
cttgaaagtcgccagcaaccgattccaccagtcgattcaaatgcccgccttcttgtccca
cctccaccagttgcccgcttggaggagaactggcctctgttggcttcagcaggagccttt
gatgctcaattaatcggattgggaggacaactggcacccaacagagctgctggtgttaaa
acaacagtgccagcatttgctgcaatggaagatgatgatgctgatgttggtaatgatgcg
tggggcgatgatgagtatctggtgggagatgatggtgaacttgaagtggacgaaggtgaa
ggcccaattgatgttgatgaagaaggtggatgggacgttgatgatgatttggcgttgcct
gatatccctgatgatcaaggaggcgacgatagtgaggaagtggttccaaatccagctcca
gcggtctcttccgaatggccgaatgtgtcccgactccctgttgatcacgttgctgccgga
tcgtttgagactgctgtcaaaattctgcgagacactattggagttgtggatcataaacca
ttcaaagatgttttcatgaaggcatatgcagtttctcgtctttcgcaccgtggttggggt
ggttcggaacctgctggtccaatattcattcaccctctccgtaactaccaagaagacaaa
aatcatttgccgatcgccgcattcaagctttcacagcttgagaagaaacttcaaaaggcg
taccaactgactacaaatggaaagttcggagatgctgttgtgaaactacgggaaattctg
ctctccattccactattggtagtcagttccaagaaagaagtcgccgaagctgagcagctg
attgcaatcactcgtgaatatcttgccgctctactactggaaacatatcgcaaagacttg
ccaaaaacgaatatggaagatgctaagaggaacgccgaactcgctgcctacttcactcat
ttcgatttacaacctttgcatcgcattctaacactaagatctgccgtgaacactttcttc
aaaatgaagcagatgaaaacatgcgcatctctttgtaagagacttttggaagttggccca
cgtccagagatcgcgactcaaattcggaaggttcttgctgccgccgagagagacaacact
gatgctcatcaactgagctatgatgaacacaatccatttgtcgtgtgctctcgccaattt
gtaccactttaccgtggacgcccaatgtgtaaatgcccgtactgtggagcatcatattcc
gagggtcttgaaggagaagtgtgcaatgtgtgtcaagttgcggagatcggcaaaaatgtc
gttggacttcgaatttctactcttaagaattaa

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