Caenorhabditis briggsae (nematode): CBG_04621
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Entry
CBG_04621 CDS
T01054
Symbol
Cbr-nxf-2
Name
(RefSeq) Protein CBR-NXF-2
KO
K14284
nuclear RNA export factor
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03008
Ribosome biogenesis in eukaryotes
cbr03013
Nucleocytoplasmic transport
cbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CBG_04621 (Cbr-nxf-2)
03015 mRNA surveillance pathway
CBG_04621 (Cbr-nxf-2)
03008 Ribosome biogenesis in eukaryotes
CBG_04621 (Cbr-nxf-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_04621 (Cbr-nxf-2)
03009 Ribosome biogenesis [BR:
cbr03009
]
CBG_04621 (Cbr-nxf-2)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
CBG_04621 (Cbr-nxf-2)
mRNA cycle factors
Stress granule specific factors
CBG_04621 (Cbr-nxf-2)
Ribosome biogenesis [BR:
cbr03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
CBG_04621 (Cbr-nxf-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
LRR_4
LRR_9
LRR_1
DUF5617
LRR_6
Motif
Other DBs
NCBI-GeneID:
8579828
NCBI-ProteinID:
XP_045092723
WormBase:
CBG04621
LinkDB
All DBs
Position
V:14673082..14674735
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AA seq
399 aa
AA seq
DB search
MRSQYRRTVNRKNEEAFSDSPPSRHPPAPSLKPVEIDVIRNVIDSRHNTEKQLLDLSNFS
KNVEFFENDMLMCLTKPRVMTTVLQWIGAKYPKISGISFSNNRLCHLEHLSALGKTTKSL
KFLDLSHNQISTEDELEKLGKVSVERLVFEGNPVCERFTQMSQYVNFIQKAFPKCSNLDG
IDVKPKEQRFDLDKFLPFRNGYYGNEEIRNLVEEFIIAYYEIYDGADGQQTRKTLLNAYD
ATNSTFTITITCLWDPYKYTMYPDSECYRMYLRNSHNVLNQEFFAANRASRISHGAMDIV
VALSRLPATVHLMDTFVVDVFLVSAELLGFTLHGTFRDGNMVAEDINSAENYFTRTFIVA
PKGEGKVAVISDQLFISSMSKRRNDKYRMLVENATDFDV
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgagaagccagtatcggcgaactgtaaatcgtaaaaatgaggaagcattctccgactca
ccaccatcgcgacatccacctgcgccaagtctgaaaccagtggaaatcgatgttattcgg
aatgtaattgatagtcgacacaacaccgagaagcagttattggatctctcaaacttctcg
aaaaacgtcgaattctttgaaaacgatatgttgatgtgtttgacgaaaccgcgagtgatg
acgacggttcttcaatggattggagcgaaatatccgaaaatttctggaatctcgttttcg
aacaatcgcttgtgccatttggaacatctttcggcactcggaaaaactaccaaatcgctc
aagtttctcgatttgagtcataaccagatttctactgaagatgaactcgaaaagcttgga
aaggtgtcagtggagagattggtttttgaagggaacccagtttgcgagcgtttcactcaa
atgtcgcagtatgtcaattttattcagaaggcgttcccgaagtgttctaatttggatgga
attgatgttaaaccgaaggaacaacgcttcgacttggacaagtttttgccgtttagaaac
ggatactatggcaatgaagagatacgcaatcttgtcgaagagttcatcattgcatactac
gaaatctacgatggtgccgatggacaacaaaccagaaagacgcttctgaacgcgtacgat
gccacaaattcgacattcacaattacaatcacctgcctttgggatccgtacaagtacacg
atgtatccagacagtgaatgctatcgtatgtacttgcgaaactcgcacaatgttctcaac
caggagttcttcgctgcgaaccgcgcgtcacgaatatctcacggcgccatggacatcgtt
gtggcactctcaagactaccagccactgttcatctgatggacacttttgttgtcgacgtc
tttctcgtctcagcagaacttctcggattcactcttcatggaacgttccgtgatggaaac
atggtcgctgaagacatcaactcagcggaaaactatttcacgagaacattcatcgtagca
ccgaaaggagaaggaaaagtggctgtcatttcagaccaattgttcatcagttcaatgtcg
aagaggcgcaatgataagtatcgcatgctcgtcgagaacgctacagatttcgatgtctaa
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