KEGG   Caenorhabditis briggsae (nematode): CBG_05052
Entry
CBG_05052         CDS       T01054                                 
Symbol
Cbr-lmp-1
Name
(RefSeq) Protein CBR-LMP-1
  KO
K06528  lysosomal-associated membrane protein 1/2
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03272  Virion - Hepatitis viruses
cbr03273  Virion - Lassa virus and SFTS virus
cbr04140  Autophagy - animal
cbr04142  Lysosome
cbr04145  Phagosome
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03273 Virion - Lassa virus and SFTS virus
    CBG_05052 (Cbr-lmp-1)
   03272 Virion - Hepatitis viruses
    CBG_05052 (Cbr-lmp-1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    CBG_05052 (Cbr-lmp-1)
   04142 Lysosome
    CBG_05052 (Cbr-lmp-1)
   04140 Autophagy - animal
    CBG_05052 (Cbr-lmp-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cbr04131]
    CBG_05052 (Cbr-lmp-1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cbr04147]
    CBG_05052 (Cbr-lmp-1)
   04090 CD molecules [BR:cbr04090]
    CBG_05052 (Cbr-lmp-1)
Membrane trafficking [BR:cbr04131]
 Endosome - Lysosome transport
  Others
   Lysosomal membrane proteins
    CBG_05052 (Cbr-lmp-1)
 Autophagy
  Chaperone mediated autophagy (CMA)
   Cargo receptors
    CBG_05052 (Cbr-lmp-1)
  Other autophagy associated proteins
   RNautophagy/DNautophagy
    CBG_05052 (Cbr-lmp-1)
Exosome [BR:cbr04147]
 Exosomal proteins
  Exosomal proteins of hepatic cells
   CBG_05052 (Cbr-lmp-1)
CD molecules [BR:cbr04090]
 Proteins
  CBG_05052 (Cbr-lmp-1)
SSDB
Motif
Pfam: Lamp2_2nd Syndecan
Other DBs
NCBI-GeneID: 8586871
NCBI-ProteinID: XP_045092828
WormBase: CBG05052
LinkDB
Position
X:complement(11843156..11844012)
AA seq 252 aa
MSKSLVAVFALLAVASAEHFYVTNNNTGLACIIVDGDFMFNLVFQEGNATQKYNVLLNNT
LNVDGDCNAVVNNQSVQTLSITFNPAGQSARYPKEWELNIVFGTSSNEAFKIIDYTLKTQ
KTELVPYFGTFVRDEKDAGDVTATETNAYKVCYFRMPSLASPTSNFQCSTAKLGLVGGST
IDIKTANIIAFAQVNGTVFPANQLYDVCYLDARTSDVVPIVVGACLAVLVIVVLVGYLIG
RARAKRQGYASV
NT seq 759 nt   +upstreamnt  +downstreamnt
atgtcgaaatcacttgtcgccgtgttcgccttgttggccgtcgcttctgctgagcacttc
tatgtgaccaacaataacactggactcgcttgcatcatcgttgatggagacttcatgttc
aatcttgtcttccaagagggaaacgctacccagaagtacaacgtgctcctcaacaatacc
ctcaacgtcgatggagattgtaacgcagtcgtcaacaatcaatctgtccaaactttgagc
attaccttcaacccagcgggacagtcagctcgttatccaaaggagtgggagctcaatatc
gtcttcggaacatccagcaatgaagcttttaagattatcgactacactctcaagacccaa
aagactgagcttgttccatattttggaactttcgtgagagacgagaaggacgctggagat
gtcaccgccactgagaccaatgcttacaaggtttgttatttcagaatgcctagtctagcc
tctccaacttcaaattttcagtgctccactgccaagctcggactcgttggaggatccacc
attgacatcaagaccgccaacatcattgccttcgctcaagtcaacggaaccgtcttccca
gccaaccagctctacgatgtctgctatcttgatgcccgtaccagcgatgttgttccaatt
gttgtcggagcctgccttgccgttctcgtcattgttgtgctcgtcggatatctcatcggc
cgtgctcgcgccaagagacaaggatacgccagcgtctaa

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