Caenorhabditis briggsae (nematode): CBG_05352
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Entry
CBG_05352 CDS
T01054
Symbol
Cbr-hrp-1
Name
(RefSeq) Protein CBR-HRP-1
KO
K12741
heterogeneous nuclear ribonucleoprotein A1/A3
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CBG_05352 (Cbr-hrp-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_05352 (Cbr-hrp-1)
03041 Spliceosome [BR:
cbr03041
]
CBG_05352 (Cbr-hrp-1)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
CBG_05352 (Cbr-hrp-1)
mRNA cycle factors
Common to processing body (P body) and stress granule
CBG_05352 (Cbr-hrp-1)
Spliceosome [BR:
cbr03041
]
Common components
Common spliceosomal components
hnRNP proteins
CBG_05352 (Cbr-hrp-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
8576749
NCBI-ProteinID:
XP_002634757
WormBase:
CBG05352
LinkDB
All DBs
Position
IV:complement(15397099..15398638)
Genome browser
AA seq
366 aa
AA seq
DB search
MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFTAKTEVDAAMKQPHVIDGKTVDPKRAV
PRDDKNRSESNVSTKRLYVSGVREDHTEEMLSDYFSKYGTVTKSEIILDKATQKPRGFGF
VTDDHDCVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMSRDRETRGGRSRDGQRGGYN
GGGGGWGGPGGAPRGGPGGWGGPGGGGQGGYGGGNYGGGWGGQQGGGGGGNQGGGWGGPQ
QQQGGWGGPQPQQGGWGGQQGGGQPQQGGWGGPQQQQGGWGQPQQPQGGGGWGGQGSGAQ
QWAHAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSND
PHFLSL
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgagttctactcgcagttcggagaaatcactgatatcattgtcatgagagacccg
acgaccaagagatctcgtggatttggattcgtcactttcaccgccaagactgaagtcgac
gctgctatgaagcaaccccatgtcatcgatggaaagactgtggatccaaagcgagccgtt
ccacgcgacgataagaatcgctcagagtccaatgtctccaccaaacgcctntacgtcagt
ggcgttcgcgaggaccacacggaggagatgctctccgactacttctcgaagtatggaacc
gtcaccaagtccgaaatcatcctcgacaaggccactcaaaagccacgtggcttcggattc
gtcaccgacgatcacgattgtgtagaccagtgtgtgctccagaagtcgcatatggttaac
ggacaccgctgtgatgtgagaaaaggactctcgaaggacgagatgagcaaggcgcagatg
agtcgtgatcgggagacgcgcggaggacgtagccgtgacggacaacgcggaggatacaat
ggtggaggtggtggctggggaggcccgggtggagctccaagaggtggtccaggaggatgg
ggaggaccaggaggcggtggccaaggaggatatggaggaggaaactacggaggcggctgg
ggaggacagcaaggaggcggcggtggtggcaaccaaggcggtggctggggaggaccacaa
caacagcaaggaggctggggaggacctcaaccgcagcaaggaggatggggaggccagcag
ggcggaggtcaaccacagcaaggcggctggggaggtccacaacagcagcaaggaggctgg
ggtcagccacagcagccacaaggaggcggcggatggggaggtcaaggctccggtgctcaa
cagtgggctcacgcacaaggagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcctcgaatgat
ccacactttttatccctctaa
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