KEGG   Caenorhabditis briggsae (nematode): CBG_05352
Entry
CBG_05352         CDS       T01054                                 
Symbol
Cbr-hrp-1
Name
(RefSeq) Protein CBR-HRP-1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CBG_05352 (Cbr-hrp-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_05352 (Cbr-hrp-1)
   03041 Spliceosome [BR:cbr03041]
    CBG_05352 (Cbr-hrp-1)
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     CBG_05352 (Cbr-hrp-1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     CBG_05352 (Cbr-hrp-1)
Spliceosome [BR:cbr03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    CBG_05352 (Cbr-hrp-1)
SSDB
Motif
Pfam: RRM_1
Other DBs
NCBI-GeneID: 8576749
NCBI-ProteinID: XP_002634757
WormBase: CBG05352
LinkDB
Position
IV:complement(15397099..15398638)
AA seq 366 aa
MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFTAKTEVDAAMKQPHVIDGKTVDPKRAV
PRDDKNRSESNVSTKRLYVSGVREDHTEEMLSDYFSKYGTVTKSEIILDKATQKPRGFGF
VTDDHDCVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMSRDRETRGGRSRDGQRGGYN
GGGGGWGGPGGAPRGGPGGWGGPGGGGQGGYGGGNYGGGWGGQQGGGGGGNQGGGWGGPQ
QQQGGWGGPQPQQGGWGGQQGGGQPQQGGWGGPQQQQGGWGQPQQPQGGGGWGGQGSGAQ
QWAHAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSND
PHFLSL
NT seq 1101 nt   +upstreamnt  +downstreamnt
atgcgcgagttctactcgcagttcggagaaatcactgatatcattgtcatgagagacccg
acgaccaagagatctcgtggatttggattcgtcactttcaccgccaagactgaagtcgac
gctgctatgaagcaaccccatgtcatcgatggaaagactgtggatccaaagcgagccgtt
ccacgcgacgataagaatcgctcagagtccaatgtctccaccaaacgcctntacgtcagt
ggcgttcgcgaggaccacacggaggagatgctctccgactacttctcgaagtatggaacc
gtcaccaagtccgaaatcatcctcgacaaggccactcaaaagccacgtggcttcggattc
gtcaccgacgatcacgattgtgtagaccagtgtgtgctccagaagtcgcatatggttaac
ggacaccgctgtgatgtgagaaaaggactctcgaaggacgagatgagcaaggcgcagatg
agtcgtgatcgggagacgcgcggaggacgtagccgtgacggacaacgcggaggatacaat
ggtggaggtggtggctggggaggcccgggtggagctccaagaggtggtccaggaggatgg
ggaggaccaggaggcggtggccaaggaggatatggaggaggaaactacggaggcggctgg
ggaggacagcaaggaggcggcggtggtggcaaccaaggcggtggctggggaggaccacaa
caacagcaaggaggctggggaggacctcaaccgcagcaaggaggatggggaggccagcag
ggcggaggtcaaccacagcaaggcggctggggaggtccacaacagcagcaaggaggctgg
ggtcagccacagcagccacaaggaggcggcggatggggaggtcaaggctccggtgctcaa
cagtgggctcacgcacaaggagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcctcgaatgat
ccacactttttatccctctaa

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