Caenorhabditis briggsae (nematode): CBG_05961
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Entry
CBG_05961 CDS
T01054
Symbol
Cbr-lsm-7
Name
(RefSeq) Protein CBR-LSM-7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03018
RNA degradation
cbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CBG_05961 (Cbr-lsm-7)
09123 Folding, sorting and degradation
03018 RNA degradation
CBG_05961 (Cbr-lsm-7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_05961 (Cbr-lsm-7)
03041 Spliceosome [BR:
cbr03041
]
CBG_05961 (Cbr-lsm-7)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CBG_05961 (Cbr-lsm-7)
mRNA degradation factors
5'-3' decay
Lsm complex
CBG_05961 (Cbr-lsm-7)
Spliceosome [BR:
cbr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CBG_05961 (Cbr-lsm-7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
8575237
NCBI-ProteinID:
XP_002633240
WormBase:
CBG05961
UniProt:
A0AAE9AHG9
A8X183
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Position
IV:complement(7437120..7438008)
Genome browser
AA seq
103 aa
AA seq
DB search
MSKDDGKRKKESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQ
NPSVIGDETRPLGLIVARGTAITVVSPADGLEQIANPFAGQEE
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagacgacggaaaacgcaagaaagagtcagttgtcgatctaaccagattcctc
gataaagagattcgtgtgaagttccaaggagggcgcgaagccagcggagttctccgagga
tttgaccagcttctcaacatggtactcgacgactgccgagaatacctccgtgatcctcag
aacccatcagttattggtgacgagacaagaccgctgggcctcattgtggctcgtggaacc
gccatcactgtggtcagcccagccgacggactcgagcaaattgctaatccattcgccggt
caggaagaatga
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