KEGG   Caenorhabditis briggsae (nematode): CBG_06232
Entry
CBG_06232         CDS       T01054                                 
Symbol
Cbr-ddb-1
Name
(RefSeq) Protein CBR-DDB-1
  KO
K10610  DNA damage-binding protein 1
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03420  Nucleotide excision repair
cbr04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    CBG_06232 (Cbr-ddb-1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CBG_06232 (Cbr-ddb-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cbr04121]
    CBG_06232 (Cbr-ddb-1)
   03400 DNA repair and recombination proteins [BR:cbr03400]
    CBG_06232 (Cbr-ddb-1)
Ubiquitin system [BR:cbr04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     CBG_06232 (Cbr-ddb-1)
DNA repair and recombination proteins [BR:cbr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      CBG_06232 (Cbr-ddb-1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      CBG_06232 (Cbr-ddb-1)
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_2nd Beta-prop_RSE1_1st PEP5_VPS11_N
Other DBs
NCBI-GeneID: 8575461
NCBI-ProteinID: XP_002633464
WormBase: CBG06232
UniProt: A8X0K9
LinkDB
Position
IV:complement(9124477..9128405)
AA seq 1134 aa
MPISYCVSAKKASVVTESVVGNFTGQDNVDLIVARGNRIDVQLVTPEGLKNICEIPIYGQ
VSTISLIKFRREKQHSLVVVTDKFNLAVLGYRDGKVITRAAGSIAEYSGRSADTAVAMTI
HRSGLIAIIGYEGSVKMVHWEPGADVRHFNVRFDYPNVSDFKFVDTGDDDTVRVAFIYDD
DHGKHLQFSDLNMHDKEFHTFSKQSCIAADSQVLIPVPAPVGGVIVLGANSALYKASDVN
GDVVPYSCSLLKNTIFTCHGIVDASGDRFLLADTDGRLLMLLLNIGEGRSGTTVKEMRIE
YLGETSVADSVNYVDNGVVFVGSRLGDSQLIRLMTAPNGGSYSVVLETYTNTGPIRDMVL
VESDGQPQLVTCSGADKDGSLRVIRNGIGIEELASVDLAKVIGMFPIRLRSTTDNFVIVS
LPDETHVLKITGEELEDVQLLEIETERTTMYASSLFGPDDSELILQVTEEEIRFMSFQKQ
VKIWRPTNGESVSKVSVNAIHGQIVVAARDTVYYLKCMVDEAGALDIQIVAERKFEAEIA
CLDISNEGDDYKKPGTFMVLALWGSFSMEVVQLSDLKTACQTNLPSKIVPRSIVATCIED
VHYLLVAFGDGALIYYVFDIKTGTHGEAKKSSVGTRPPSLHRVRNKNRQHLFVCSDRPVI
IFSANKKLVFSNVNVKVVNTVCSLSSTSYRDCLVISDGNSMVFGTVDDIQKIHIRSIPMG
ESVMRIAYQKSTGTYGVCSSRSETKPERVYASKNALANSQSRAKIVATRNEVNDGPPAST
SSFMILDQNTFQVLHAHEFGPFEAAVSCISGQFSDDARQYYIVGTGLIYPDESDTKLGRI
IVFEVDDVERTKLRRVHELVVRGSPLALRILNGKLVAAINSSVRLFEWTADKVLRLECSN
FNHIVALDLKVMNEEVAVADLMRSVSLLSYRMMEGNFEEVAKDWNSEWMVTCEFITAESI
LGGEAHLNMFTVEVDKSRPITDDGRYVLEPTGYWYLGELPKVMVRASLVVQPEDSTIEYS
HPIMFGTNQGTIGMLVQIDDKWKKFLVSIEKAISDSVKNCMQIEHSTYRSFIFQKRIEPP
SGFIDGDLVESILDMDRSVAIDILKKVSDKGWDASLPRDPVEMLKVIEDLARMH
NT seq 3405 nt   +upstreamnt  +downstreamnt
atgcctatcagctactgtgtttctgcgaaaaaggcttccgttgtcactgagtcggtagtt
ggcaactttacagggcaagacaatgttgacttgattgttgcccgtggaaaccgcatcgat
gtacaactcgtcacaccagaagggctcaagaatatttgtgagatccccatctatggacaa
gtttcaacaatttcgctcatcaaattcagacgtgagaaacaacattccttggtggttgtt
acggacaagttcaacttggcagttctaggatatcgggatggtaaagtcatcacacgtgct
gctggaagtatcgctgaatatagcgggagaagtgcggacaccgcagtcgccatgaccata
catcgcagtggtctaattgcaatcataggctacgaaggaagtgtgaaaatggttcactgg
gaaccaggcgccgacgtccgtcatttcaatgttcgatttgattatccaaatgtctctgat
ttcaaatttgtcgacactggtgatgatgatacagtccgggttgcattcatctacgacgat
gatcacggcaagcatttgcagttctctgacctgaatatgcacgacaaggaatttcatact
ttttctaaacaatcttgcattgctgctgattctcaagttctcatcccagttcctgcacca
gttggaggagtaatcgtgttaggagcaaactctgcactttacaaagcaagtgacgtcaat
ggcgatgtggttccttattcatgttctctgctcaaaaacactattttcacatgccacgga
atcgttgatgcatctggagacagattcttgcttgctgacacagatggacgacttctgatg
cttcttctgaatattggcgaaggaaggtctggcacgacagttaaagaaatgcgtattgaa
tatcttggtgaaacatcggttgctgactcagtgaactatgtggacaacggggtcgtattt
gttggatcaagactcggagattcacaacttatccgtcttatgactgcaccgaacggagga
agttattcagtggttttggagacgtataccaacaccggaccaattcgtgatatggttctg
gtagagtctgatggacagccacaactggtgacatgctcaggagcggacaaggatggatca
ctccgtgtcattcgaaatggaattggaattgaggaactagcgagcgtggatttggctaaa
gttattgggatgtttcccatacgccttcgatctacgaccgataattttgtgatcgtgtcg
ttacctgacgaaactcacgttctcaaaatcaccggagaagagctagaagatgtgcaactt
ttggaaatcgaaacggagagaaccacgatgtatgcgtccagtttgtttgggcctgatgat
tccgagctcatcctacaagtgacggaagaagaaatccgtttcatgtcattccaaaaacaa
gtaaaaatttggagaccgacgaatggggaatctgtgtcgaaagtatcagtgaatgctatc
catggacaaattgtggtagctgctagagacaccgtttactatctcaaatgtatggttgac
gaagcaggcgcgcttgatatacagattgttgccgaaaggaaatttgaagcggaaatcgct
tgccttgatatctcgaacgaaggtgatgattacaaaaaaccaggtactttcatggtgctg
gctctatggggatcattctctatggaagtcgtgcagctttcagatttaaagacggcttgc
caaaccaatctgccgtccaaaatcgtcccacgttcgattgttgccacttgcattgaagac
gttcactatcttcttgtcgcctttggagatggagcgctcatttactacgtctttgacatc
aaaacaggaactcatggagaagctaaaaaatccagtgtgggtacccgtccgccgagtctc
catcgagttcgtaataagaaccgtcaacatcttttcgtgtgctccgatcgtccagtgata
attttctcagctaacaaaaaactcgtcttctcaaatgtgaacgtcaaagtagtgaatact
gtctgttcgttgagctctacttcttatcgtgattgtcttgtcatatcagacggtaattca
atggtgtttggaactgtagacgacattcagaaaattcatatccgctcaattcctatggga
gaatcagttatgcgtatcgcttaccaaaaaagcacaggaacttatggtgtttgttcgtca
cggtcggagactaagcctgagcgagtttatgcatcgaagaatgctcttgcgaattcacaa
agcagagctaaaattgttgcaactcgaaatgaggtgaatgacgggccacccgcttcaact
agtagcttcatgattctcgatcagaacactttccaagttcttcatgcgcatgagttcgga
ccatttgaagcagcagtgagctgcatctcgggacagttttctgatgatgcgagacaatac
tacatcgtcggaactggtcttatctatcctgatgaatcggacacaaagctaggtcgaatc
attgtcttcgaagtcgacgacgtagagagaacgaaattgagacgtgttcatgaattggtt
gtgcggggaagtcctctggctctacgtattcttaatggaaaactggttgccgctatcaac
agttcggtcagactttttgagtggactgcagacaaagtgcttcgtcttgagtgcagtaac
ttcaatcacatagtagctctcgatttgaaagtgatgaacgaagaagtagccgtagcggat
ttgatgagatccgtgtctcttctttcttaccgaatgatggaagggaatttcgaagaagtt
gcaaaagattggaatagcgaatggatggtaacttgtgagtttatcactgcggaatcgatt
ctgggaggagaagcacatttgaacatgttcacagtagaagttgataagagtcgaccgata
acagatgatggtcgatatgtactagaaccaactggatattggtatctaggtgaacttcca
aaagtaatggtcagagcctctctcgttgttcaacctgaagacagcaccatcgaatacagt
catccgattatgtttggaacaaatcaaggaacgatcggaatgttggttcaaattgatgat
aaatggaagaagtttttggtttccattgagaaggccatatctgattctgtgaaaaactgt
atgcagatcgaacattccacctacagatctttcatattccaaaaaagaattgaaccccca
tctggtttcattgacggtgatctagttgaatcgattctggatatggatagatctgtggct
attgatattttgaaaaaggtctccgataaaggatgggatgctagccttcccagagaccca
gttgaaatgttgaaagttattgaagatctcgctcgaatgcattaa

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