Caenorhabditis briggsae (nematode): CBG_06439
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Entry
CBG_06439 CDS
T01054
Symbol
Cbr-ttb-1
Name
(RefSeq) Protein CBR-TTB-1
KO
K03124
transcription initiation factor TFIIB
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CBG_06439 (Cbr-ttb-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbr03021
]
CBG_06439 (Cbr-ttb-1)
Transcription machinery [BR:
cbr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
CBG_06439 (Cbr-ttb-1)
Prokaryotic type
Archaeal type
TFB
CBG_06439 (Cbr-ttb-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Brucella_OMP2
BRF2-like_C_cyclin_rpt
TFIIB_C_1
Motif
Other DBs
NCBI-GeneID:
8589377
NCBI-ProteinID:
XP_002647378
WormBase:
CBG06439
UniProt:
A0AAE8ZYG1
A8X282
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Position
V:complement(6480346..6482351)
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AA seq
306 aa
AA seq
DB search
MSAPVQCPVHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVG
APENPLLTGGDLSTTIAVGFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHL
PRNIQDNASRIFKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKE
IGRCFKIIIRNLETNLEQITSADFMSRFCGNLYLPNSIQAAATRIAKRAVDMDLVAGRTP
ISIAAAAIYMASQASGEKRSAKEIGDVAGAAEITVRQTYKLLYPKAAELFPEDFRFVTPI
EALPNS
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccagttcagtgtccagttcatccagatgttcatctcatcgaagatcaccgt
gctggcgacttggtctgcccggcttgtggtttagtcgttggtgatcgtttggtcgatgtc
ggtaccgagtggcgttcattctccaacgagcgaagcggaaacgatccgtctcgtgtcgga
gcaccagagaatccgctgctcaccggtggagatttgtccacgacgattgccgtcggattc
ggaggctccgacagcgacaacagtttggcaaacgctcagagaaagtcaatgaacaacaca
gacagacagatgacagcggcgatgagcttgattcgtgaaatgagcgagagaattcatttg
ccaagaaatattcaggacaacgcttcccgtatattcaaagacgttctcgacagtcgtgct
cttcgtggaaaaaacaacgaggctcaagcagccgcttgtctgtatatcgcttgccgaaaa
gacggagttcctcgtacattcaaagaaatttgtgcggtttctcgtgtctcgaagaaggaa
atcggtcggtgcttcaaaataatcataagaaatttggagacgaatctcgagcaaatcaca
tcagccgatttcatgtctcgtttctgtggaaacttgtatcttccgaactcgattcaagca
gccgccacgagaatcgccaaacgagctgttgatatggatttggtggctggacgcacaccc
atctccatcgctgccgctgcgatttacatggcatcacaggcgtctggcgagaaacgatca
gctaaagagattggtgacgtggcaggagccgccgagattactgttcgacagacgtacaag
cttttgtacccgaaggctgccgagctcttcccagaagacttccgctttgtcacaccgatt
gaagcactaccaaactcataa
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