Caenorhabditis briggsae (nematode): CBG_07562
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Entry
CBG_07562 CDS
T01054
Symbol
Cbr-rbc-1
Name
(RefSeq) Protein CBR-RBC-1
KO
K24155
rabconnectin-3a
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
CBG_07562 (Cbr-rbc-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cbr04131
]
CBG_07562 (Cbr-rbc-1)
Membrane trafficking [BR:
cbr04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
CBG_07562 (Cbr-rbc-1)
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
CBG_07562 (Cbr-rbc-1)
RAVE complex
CBG_07562 (Cbr-rbc-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
WDR55
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR75_1st
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
8587830
NCBI-ProteinID:
XP_045093503
WormBase:
CBG07562
LinkDB
All DBs
Position
X:complement(18644944..18659296)
Genome browser
AA seq
3107 aa
AA seq
DB search
MNAHQVITGALNNGENVYALGNVEGLTFTACAVGSDVVILDSDFNRVQIIPESKNQLIVS
SLSCCQETGKIAVTYGNLVKILEVTNSVVDKSKLKSLIFQFHWVETYSFTHKEPISSVQW
SMEGLRLLFVIGNKLVLHQHRSVSSTSKSFTSTPVSFSISEEDLQERHTWEVIWTTALPS
KPKFIKYSPDGYYLALAGDRDCFIKIFHQNTLEHSELDFCEIILNHPAPVCGFEWRKTGR
YMPRKCISPILMSWCEDRTSRIWKETPAPEGSIIDLTGEGGGDPLWDRQKQKKFLGKYIR
VKKTKTRILNKIRKMMPEKHQETDSNPIGLRAQIGKSPSLLDFPSPLSKESEKDKIEQSE
VSFYLAATINAETDCLLVPSFNDTNIRKPFCVHWLNNKELVFSVGAEKLLAEAVLLDLDG
ELNSLTKFEIYSKISGTPTANHVPEEESPMEEIKSTTDHDQAPSDSSKTAGSTSSDAPSS
KDILDVKLEILLRQWTKSNDVLFSIHPVDGSLLTWTVEWLDDHFRQPVISYSSRLPGALP
SSDSMSLQSKLNTFNPHEPIYLDALRNSEDKDTSVMLHDKLLERRVSNTIHVLTSHDNGT
LNLWHMSVDDQSSFSCVVSMTHISRMCGHRFQMQQVRFHIIAHPVLPLLLTTSKFKSPKV
KVDSTMDVLSEVILWKITPVGPLCKNGGVKELARVASPIISGFSTVGWVPAILPSCTLGT
VCNSPSSCFISCDGSQLIIYQAVLDARGLLSELSNAKTAYSGRETLDNYSDKILRTPSPR
SDRAPTFLKQFNVVSTQSTAKPGCVLEVGKIEDVNLNELNLMFLHVFQSRIVIANDEEDA
SEISAMSSVIDRSQTPTFKDKFFIVVVDQKENEDVIMMFSLTISSQPPQSIPNFDTEVLP
GEKGFLRPSSPLAPSMAKLNFEADLVCRQVMPLPEGTRLTNVVPAAGHLSSSSIYPACET
PYVLVSSDNDDSVRFWRCIKVTDQVSPNKFEWREWNMISENHPSELGVEGAIVKVNAAHS
GRIACAYQKPNRNSSDPNISIEVAVFECESSGGVEWFREDSFSIQQNHFYEFSKPHYQDA
HNKRSSSGEQEHLNLLQQRTEVLRASFRRGVISRINTGKPTKPSYELIRAIENSSPSVTD
IAQSKKNIQISKLMELFSVNIENIVRLDWVSTEDGTHMLTVGMGTKVYIYAQIGQDPAQQ
NVTLMRESETTMRRPSIRKASSLLPNIQPNSRFTSWVCCRVLNLDTADGLPPIPTALSWV
RDGILIVGMQSEMRVYNQWNFKTTDNNKLKKAIPAANPNIVSLTVSTSHSMLDQLTRKKE
ALVSSRSRVFLEFVNTMHKAHPKENESQMVLDILKSEGVFETARMASPILPQYHPKQLIV
LLNAGKKRRVKAILNHVLSCLKQKKCAAHNPLSRAASIKRMSTVDRGDSVPAMPVDARMD
DDSMDYDEIDDIPLLPLYALIEADHEVPVVHEKQEELVVKNTDEYDDLFDNGYDKDGDID
AILKDTDSVYSGRSRHLSVGSDSAARNESHVTATFTAKDYRKLTELLTHTHLPGLSSVDQ
MHLLAIADTLSHFASDAQDKVEQANAAMKPVVRSVLGDNAAGGYATAAAGVETVDECGLR
YLMAMKQHEYLLVCLPMKQRMELKKTGLSAANIIWAQHSETEVELLNAVPGMHKTSPSWE
ELRGLGVAWWLKNTASLRICIEKVSIAKASFQANQDPMDASLFYLALRKKNVLTHLFKTV
RNQTMADFFMNDFNQEHWQKVAAKNAFVLMSKQRFQHAAAFFLLSGSLKDAVQTLCSKCN
DVQLALVVVRMYESDPESQQAMVNELLCREVLGITYEEFEQQRGRTDEDTPVSVHASKEP
FERSMAFWMLKDYTRSAHTLVQEAQSDRLLSSLSDIFNFYSYLRKHPLVVRQRLNNIGAQ
VGTTEKLLALGRQLENILTPPERRLFFRTSAEHMARGCPMLSLDVLTMLPKNISIVQDYD
EALRTIFGGTEQAVPPPPPVEVDWSKPTTSDEPDELKLDWSDDEDEEGAAELEVKPEEPA
PLIVNGMDSSAVLQSQLVGSTDIFAQHMKFVASLRILTEELSTLASGFDVDGGQLRNQLL
NWLEREVEVLQTNCDYNAERKPTLPHEENQDSDYWSSTGANYEHAEQKLSRASPGLTPKR
RIWLKANQKLLRSFTSFCTLHSAHNHRLASVLMELLLLLLNVQRDAEDDILPKQLLASGV
STFPLLDAAVSSPKMFVSSPLAYIENQGNDLLASISELHNVPNMAGDLQKCYMLYNLCQG
FSCCIYLSLTDIDQTYSSMLNLEPRPAPIGRSDNHVVTPPVKWPGVEALVALLGREKEDD
APQLRLLIIESFLAISMSLFCFALSAYDSRWLYRLSVHEIDPHKFGQIFGGGGETKKASH
PPARPPRPAAPTPKDSTVENNGEQIRSRLNLRILGNEKFSTASKDSLPSEQSYSKWVPPQ
MNIVQLFADKPNVSRQDDEDETMYDSDEEEKGTGYSDDEDNEDECCENAAPSSFAWQLLR
LALIQQQLYRVKQFLVLVGFDPRDIPTVAPRIDAVLQQLSNWIVQQHQTLKTFPGGIPND
LLPDMTIDTSDQHLAATMKKYAALVKKNNTPFESDDKKIQTIRRLWSFLVREDHLQEIFI
KYIFSQHSIMESAPEPVDAFFGIDSNPILPEAFKIVQKDSEPIVAFACNQESPGLIVVSN
GRELQEMDMSNVFKDQYDQTSWMWNRAELDMKNIHSKRDALRDNDDYQIFTDSNAHNAKH
TNVDVHFYNNPNFFQMIKRHIPGVRRIDSHPHAPFYVTGSSDGSIKVWKWGAKDTVYTAR
VAGQHAKVAKIAFSCNGNKFAAVDGDGMLCLWQASQATEQKKPFFVSSAIWVNEYTSIIL
IIFQSQRCHNKSAADVCFLGHSSSVLLTAGSSSLDYNLGLWDTLLPTNRALVHSWAAHPE
GATCALYVPNQQTIFSGGRHGEICLWDIRQRQLRHTIKAFDQMHIVKTLATDSAQDLIVS
GSSEGDIKIWSADANPQLMYNLPGEHTAKGGFSFRQDQRSLECHIRNFSKHRKSEFHIFG
IQKFGQSSVQGVQQLFIDQNMRLFSCGADASLKFRTLPSIFNMTNLI
NT seq
9324 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctcatcaggtgatcacaggagcgctcaacaatggcgaaaatgtatatgcacta
ggaaacgtcgaagggttaacattcacggcatgcgccgtcggctccgatgtcgttattttg
gactcggacttcaatcgtgtacaaattattcccgaatcgaagaatcagttgatagtcagt
agtttgagctgttgtcaggagacaggaaagattgcggtgacttatggaaaccttgtcaaa
atattggaggtcacaaattcagttgtggataagagcaagctcaaaagccttattttccag
ttccattgggtggagacttactctttcactcacaaggaacccatcagttcggtacaatgg
tccatggaaggattgcgtcttctattcgttatcggaaacaaactcgtacttcatcagcat
agaagtgtcagtagcacaagcaaatctttcaccagcactccagtctcattctccatttct
gaagaagatctccaggagcggcacacttgggaggtcatttggaccaccgcacttccatca
aagccaaaatttatcaaatactcaccggatggatactatctggctttggccggcgaccgc
gattgctttatcaaaatattccatcaaaacacactggaacattcggagctggatttttgt
gaaataatcctaaaccatccagcgccggtttgtggctttgaatggcgaaaaaccggacga
tatatgccaagaaaatgcatctcaccaattttgatgtcctggtgtgaggatcgaacgtca
cgcatctggaaggagacaccagcacctgaaggatcgatcattgatttgactggtgaaggt
ggtggggatccgttgtgggatcggcagaagcagaagaagtttttggggaaatatatcaga
gtgaagaagacgaagacgaggattttgaacaagatacggaaaatgatgcccgaaaaacac
caggaaaccgattccaaccctatcgggctccgcgcacaaattggcaagagcccttcactc
cttgatttcccatcaccattgtcgaaagaaagcgaaaaagacaaaatcgagcagtccgag
gtgtcattctacttggctgccaccatcaatgccgaaacagattgtctcttggttccttct
ttcaatgacaccaacatccggaaaccattttgtgtgcattggttgaacaataaggagttg
gtattcagtgttggagcggagaagttgctcgccgaagctgtgctcttagatcttgatggt
gagctgaacagcttgacaaagttcgaaatatattctaaaatttcaggtacacctactgcg
aaccacgtgcctgaagaagaatcgccgatggaggagatcaagtcaacgacggaccatgat
caggctccatctgacagctctaagacagcaggcagtacatcgtcggatgctccttcatcc
aaagatattctcgatgtgaaactggaaattcttttgagacaatggacaaaatcaaacgat
gtgttgttctccattcacccagttgacggatctcttctaacctggactgtcgagtggtta
gatgatcatttccgtcaaccagtcatctcgtatagttctcgacttcctggtgcactgcct
tcaagtgattcaatgtctctgcagtctaaattgaatacgttcaatccacatgagccgatt
tatctggatgcgttgagaaattccgaggacaaggatacaagtgtgatgttgcatgacaag
ctactggaaagaagagtttctaacacaattcatgtgctcacttctcacgataacggaact
cttaacctatggcacatgtctgttgatgatcagagtagtttctcttgtgtcgtcagtatg
acccatatctccagaatgtgtggacatagattccagatgcaacaggtaagatttcatatc
attgctcacccggttctccctctcctactgaccacttccaaattcaagtctcccaaagtg
aaagtagactcaactatggatgtcctctctgaagttattctctggaaaattaccccagtc
ggaccgttgtgcaaaaatggaggagtgaaggagctggcgcgtgttgctagtcctattatc
agcggtttctctactgttggatgggtccctgcaattctccctagctgtacactcggaaca
gtttgcaattcgccatcctcatgcttcatctcgtgtgatggaagccaactaatcatttac
caagcagttctcgacgctcgtggacttctttctgaactctccaacgccaaaactgcatat
tccggaagagaaactcttgacaactacagcgataaaattcttcggactccatcaccacgc
agtgatcgtgcaccaactttcttgaagcaattcaatgtagtttctacacaatcgacagca
aaaccaggatgtgtgctagaagttggcaaaattgaagacgtgaatctgaatgagttgaat
ttgatgttccttcacgttttccaatcgagaattgtgattgctaatgatgaagaagatgca
agtgagatcagtgcgatgagcagtgtcattgatagaagtcagactccaactttcaaggac
aaattcttcattgtcgttgttgatcagaaggagaatgaggatgtaatcatgatgttctct
cttaccatctcctcccaaccgccacaatccattccaaactttgacactgaagttctaccc
ggcgagaaaggattcctccgtccgtccagtcctctggctccttccatggcgaaattgaat
tttgaagcggaccttgtttgtcgacaagtcatgccacttccagagggaactcgtctcacc
aacgttgtcccagccgctggacacctctcctcttcctccatctacccagcatgtgagacc
ccatacgttttggtgtcatctgataatgatgactcggtgagattctggagatgcatcaaa
gtgacggatcaagtgagtccgaacaagtttgaatggagagagtggaacatgattagcgag
aatcatccaagtgaattaggagtagaaggcgccatcgtcaaagtcaacgcagcgcacagc
ggaagaatcgcctgtgcataccaaaaaccaaacaggaactcgtccgaccccaatatttcc
attgaagttgcagtgtttgaatgtgaatcatcaggaggagtggaatggttccgtgaggat
tccttcagtattcaacagaatcatttctatgaattctcgaaaccacactatcaagacgcg
cacaacaaacgatcctcctccggcgagcaggagcatctgaatctactgcaacagcgtacg
gaagttttgcgtgctagtttccgacgtggtgtgatttctcgaatcaatactggaaaacca
accaaaccgtcttatgagctcattcgtgcaattgagaattcatcgccatcggttacggat
attgctcaaagtaagaaaaatatacaaatttcgaaacttatggaacttttttcagtgaac
attgagaacattgttcgtcttgattgggtatctacggaggatggaactcacatgcttacc
gtcggaatgggtaccaaagtatacatttatgcacaaatcggtcaggatcctgctcaacaa
aatgtcacattgatgagagaaagtgagacaacaatgcgaagaccatcaattcgcaaagcg
tcatctcttctcccgaacatccagccaaatagtcggttcaccagttgggtctgctgccgt
gtgcttaatttggacactgccgacggacttccaccgattccaactgctttgagttgggtg
cgcgacggtattctgattgttggaatgcaaagtgagatgagagtgtataatcagtggaat
ttcaaaaccactgataataataagttgaagaaggccatcccagccgccaaccccaatatc
gtcagcttgacagtctccacatctcattcgatgctggatcaattgactcgcaagaaggag
gcattggtatccagtcgtagcagagttttcctagagtttgtgaacactatgcacaaagca
catccaaaagaaaacgaaagtcaaatggttttggatattctgaagagcgaaggagtcttc
gagacagctcgcatggcttcaccaatccttccacaataccatcccaaacagcttattgtt
cttttaaatgccggcaagaaacgacgtgtcaaagcgattctcaatcatgttctgtcttgt
ctgaagcagaaaaagtgcgccgctcacaacccactcagtcgagcagcttctatcaaaaga
atgtctactgtagaccgtggtgactctgtaccagcaatgccagtagatgcgagaatggat
gacgactcgatggactacgatgagattgacgacataccactgctacctttgtatgctttg
attgaagctgaccatgaagttccagttgttcacgagaagcaagaagaattggtagtgaag
aacactgatgagtacgatgacttgtttgacaatggatatgacaaagatggtgacattgat
gccatattgaaagatacagattctgtatacagtggaagatcccgtcatttatcagttgga
agtgattctgctgctagaaacgagagtcacgtcaccgcaacgttcactgccaaggactac
agaaagctaaccgagctgctcactcacactcatcttccaggattatccagtgtagatcaa
atgcatctgttggctatagctgacactttgagtcactttgccagtgacgctcaggacaag
gtggaacaagctaatgcagcaatgaagccagttgtgcgatcagttcttggagacaatgct
gctggcggatatgcaaccgcagctgccggagtggaaactgtcgacgagtgtggattgaga
tacttgatggctatgaagcaacacgaatatctcttggtgtgtcttccgatgaaacagcga
atggaactaaagaagactggactctcagcagccaatatcatttgggcacagcactcggaa
actgaagtcgagttgttgaatgcggttccagggatgcataaaacaagtccatcgtgggag
gaattgagaggccttggagtggcatggtggttgaagaataccgcaagtttgagaatttgc
attgaaaaggttagtattgccaaagcgtcattccaagcaaaccaagacccaatggacgct
tccttgttctatcttgctcttcgaaagaaaaatgtgcttactcatttgttcaagactgtc
cgcaaccagacaatggctgatttcttcatgaacgacttcaaccaggagcactggcaaaag
gtcgccgctaagaatgcattcgtcttgatgtcaaaacaacgattccaacatgctgcagca
ttcttcttgttgagtggaagtcttaaagatgcggttcagactttgtgcagcaagtgtaat
gacgttcaattggctctggttgtcgtgagaatgtatgaaagtgatccagaatctcaacaa
gcaatggtcaatgagttgttgtgcagagaggttcttggaatcacctacgaagaattcgag
cagcaacgtggtcgcactgacgaagacacccctgttagtgttcacgcctccaaagaacca
ttcgaaagatctatggctttctggatgctcaaggactacacaagatctgcacacactttg
gtacaagaagcacaatccgaccgccttctatccagcctctctgacattttcaatttctac
tcttatcttcgcaaacatccattggttgtccgccaaagactcaacaacattggagctcaa
gtcggaaccacagagaaacttctggcacttggaagacagctcgagaatattctaacccca
ccagaacgtcgtttgttcttcagaacatccgctgaacacatggctcgtggatgtccaatg
ctttcattagatgtgctcacaatgctaccaaagaatattagtatcgtgcaggattacgac
gaggcactaaggactatcttcggaggaaccgagcaagcagtaccgccaccaccgcctgtg
gaagttgattggagcaaacctacaacttctgatgagccggatgagttgaaattagactgg
agtgatgatgaagacgaggaaggagctgctgagctggaggttaagccagaagaacctgca
cctttgattgtcaacggcatggacagctctgcagtgttgcaaagtcaacttgtaggatca
actgacatttttgcgcagcatatgaagtttgtggcgtctctaaggatactcaccgaggag
ttgtcaacactggctagtggttttgatgtcgatggtggacagttgagaaatcagctcttg
aactggcttgaacgagaagtggaagtgctccaaaccaactgcgactacaatgcggagcgg
aaaccaacactgccccatgaagaaaatcaagattctgactactggagctctacaggagca
aactatgagcatgctgagcaaaagttgtcacgtgctagtccaggactcacaccaaaacgg
agaatatggttgaaagccaatcaaaagctactgagatccttcacatctttttgcacgctt
cactcggcacacaaccatcgtttggcatcagttcttatggaattgcttttacttctgctc
aatgttcaacgtgatgcggaggatgacatcttgccaaagcaactcttagcctccggtgtg
agcactttccctctgctcgatgcagccgtttcatctccgaagatgtttgtatcgtctcca
ttggcttatattgagaatcaaggaaatgatcttcttgcttctatcagcgagcttcacaat
gtgccgaatatggctggtgacttgcagaagtgctacatgctctacaatctctgccaaggt
ttctcctgctgcatctatctatcgttgacggatatcgaccagacctactcctcgatgctc
aatttggagccaagacccgctccaattggaagatccgacaatcatgttgtgaccccacct
gtaaaatggcctggtgtagaagcattagtggcgttgttaggacgtgagaaggaagatgat
gctccacaactccgattgctcatcatcgagtcattccttgctatctcaatgtcactgttt
tgttttgcattgtctgcttacgactctcgttggttgtaccgtctcagcgttcatgagatc
gatccacacaaatttgggcaaatcttcggaggaggtggtgaaactaagaaagcgtctcat
ccaccagccagaccgccacgacctgccgcaccaactccaaaagattcaacagtcgaaaac
aatggggaacaaattcgaagtcgtttgaatttgcgaattcttggaaacgaaaaattctca
acggcatcaaaagatagtctcccgtcggagcaatcctattcaaagtgggttccaccacaa
atgaatattgtgcagttgtttgccgacaaacccaacgttagtcgtcaagacgatgaagat
gagactatgtacgattctgatgaagaagaaaaaggaaccggctattcagacgacgaagac
aacgaggacgaatgttgtgagaatgcagcaccttctagttttgcttggcaattgctcaga
ctcgcgctgatccaacaacagctgtatcgtgtcaagcagtttttggtgttggttggattt
gatcccagagatattccaactgtcgctcctcgaatcgacgccgtccttcaacaactcagc
aactggattgttcaacaacatcagactctgaaaacgtttcctggtggaattccaaatgac
ttgttgccggatatgaccattgatactagtgatcaacatcttgccgccacaatgaagaag
tatgcagcattggtgaagaagaataacactccatttgaatctgacgataagaaaatccaa
actattcgccgcttatggtcattcttggtgagagaagatcatcttcaagagatcttcatc
aagtacatcttctcacaacacagcatcatggaatccgccccagaaccggtcgacgcgttc
tttggaattgatagcaacccaattcttccagaagcgttcaagattgttcagaaggatagc
gaacccattgttgcgttcgcttgcaatcaagagagcccagggctcattgtggtctctaat
ggacgagaactccaggagatggatatgtccaatgtgtttaaggatcaatatgatcagact
tcttggatgtggaatcgagcagagttggatatgaagaacattcattccaaacgagacgca
ttgcgagacaatgatgattatcaaattttcacggactcaaacgcccacaatgccaagcat
actaacgtggatgttcatttctataacaacccgaatttttttcagatgatcaaacggcac
atccctggtgtccgacgtatcgattcccatccacacgctccattctatgtgactggatct
tctgatggatctattaaagtctggaagtggggagccaaggatacggtttacactgcaaga
gttgccggacaacacgccaaagttgctaaaattgcgttctcgtgcaatgggaacaaattt
gccgctgtggacggagatggaatgttgtgtctctggcaagccagtcaggcaactgaacaa
aagaaaccattctttgtgagttcagctatttgggtgaatgaatatacctcaattatccta
attatctttcagagtcaacgttgtcacaacaaatcagcagccgatgtttgtttccttggt
cactcatcatctgttctcctcaccgctggatcctcatctctcgactacaatcttggcctc
tgggacactcttctcccaaccaacagagctcttgttcattcctgggctgcccatccggaa
ggtgccacatgcgcactttacgtgccaaaccagcagaccattttctctggaggaagacat
ggagagatttgtctttgggatatcagacaacgtcagttgagacacaccatcaaggctttc
gatcagatgcatattgtgaagacgttggcgacagactcggcacaagatttgattgtgtct
gggtccagtgaaggagatataaagatttggtcggccgatgcgaatcctcaattgatgtac
aatctgcctggagagcatacggcgaagggaggattctcgtttagacaagaccagagaagt
ttggaatgccatattcggaatttttcgaaacatcgaaaatcagagtttcacattttcgga
attcaaaaatttggccaatcgtctgtccaaggagtccaacaacttttcatcgatcaaaac
atgcgcctcttctcgtgtggtgctgacgcctcgctcaagttccgaaccttaccatctatt
ttcaacatgacgaatctcatctaa
DBGET
integrated database retrieval system
