Caenorhabditis briggsae (nematode): CBG_08071
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Entry
CBG_08071 CDS
T01054
Name
(RefSeq) Protein CBG08071
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
cbr
Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cbr01009
]
CBG_08071
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_08071
Protein phosphatases and associated proteins [BR:
cbr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
CBG_08071
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
CBG_08071
mRNA cycle factors
Stress granule specific factors
CBG_08071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
Staufen_C
DND1_DSRM
GIT_SHD
Motif
Other DBs
NCBI-GeneID:
8585202
NCBI-ProteinID:
XP_045093651
WormBase:
CBG08071
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Position
X:145336..150176
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AA seq
693 aa
AA seq
DB search
MNEIRLEESTMSAKLESNDGTPLASPNDKLSTKVHPQHWCGQHKFEADSPTNFYDYTTSK
NKNKSAMCRVAEIARFNKLRHFYDLQDESGPAHKKLFTVRLVLNNEETFEGSGTSIKRAQ
QAAAETALEKTSLPQPSERNARRRLNEMSKPHRVLQNVCRTLSYVSPNYVSCNPPVFPDP
QCIVPEHILLPEHEYSMYQPQFPLMPLDPNRPLGPTLQAVIFYFVFLYCEKVIVYVDGKP
LATGVAETFPLAKQDARQKLSRFSDRRFENTNYTQKSVISDIHEKAHLLKLNVVFETLKE
EGPPHDRVYVVRCAFVSSNKEVKAEAIGKGKKKKVAQQEACTQLLKNAEHLSPQTNPVSV
ATNVCRTQKKLASIHREPKRKTIVKDKKMDPHYGHQINPVSRLIQVTQAKSRHHPTFELL
SENGVSKYKEFVIQAKYGEIVCEGKGPNKRLAKRAAAEEMLDLIGFVKPLPPPGKSLLKK
NPDADYSHTQITHWTGPPSPKGVEEIPSFPTPSDIQTKISIETGLEEKSDGSPDTEKRRV
TFNSEVYACPPPGDQNYPNSIVQSLKKDTIVEGKFRKLKRSKEHRRVLTADQMQELSDKA
ELFLDSAKQGFSADPFDTAHHQLDRLSQCFKFSVHYTAFPQTEMNQEFTIVSLGLDTPLV
GHGTGDTTEEADERAALDAITKLKQLASISLQP
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaatacggctagaggagagtacaatgagtgcaaaattagaaagcaacgatgga
acccctctggctagtccaaatgacaagttatccacaaaagtccatccacaacactggtgt
ggccagcacaaatttgaagcggactctccgacaaatttttatgattacacgacaagtaaa
aataaaaacaaatcggcgatgtgtcgtgttgccgagatcgcaagattcaacaaattgcgt
cacttctatgatctacaagacgaaagtggacctgctcataaaaagttattcactgttaga
ttagtattgaacaacgaggaaacgttcgaaggaagtggtacgtctatcaaacgagctcaa
caagcagctgcagaaactgcattggagaaaaccagccttccacagccatcagaaagaaat
gctcgacgcagattgaacgaaatgtccaaaccacatcgtgtgcttcagaatgtatgtcga
acgttaagttatgtatcgcccaattatgtttcttgcaacccgcctgtgtttccggaccct
cagtgcattgttcctgaacacattcttctaccagaacacgagtactctatgtaccagcca
cagtttccattaatgccactggaccccaatagaccgctaggaccaacattgcaagcggta
attttttattttgtttttttgtactgtgagaaggttattgtgtacgttgatggaaaacca
cttgccacaggcgtagcagaaacgtttccattagctaaacaggacgcgcggcaaaagctc
tcgcgattctcggaccgacgcttcgagaacaccaactacacacaaaagtcggtgataagc
gacattcatgagaaagctcacttattaaaactaaatgtggtattcgaaacacttaaagaa
gaaggaccaccacatgaccgcgtctatgttgtgcgatgtgcattcgtttctagcaacaag
gaagttaaagctgaagcaataggaaaaggaaaaaagaaaaaagttgcacaacaagaagca
tgcacacaacttcttaagaacgcggaacacctttctccacaaacaaacccagtatcagtt
gctactaacgtgtgtaggactcagaagaaacttgcctctattcatcgtgaaccaaaacgg
aaaacaatcgtgaaagacaagaaaatggatccgcattacgggcatcaaatcaacccagtg
tctagattgattcaagtgacacaagccaaaagccgtcaccaccctacatttgaacttttg
tctgagaatggagtcagcaagtataaagagtttgtcatacaggcaaagtatggtgagatt
gtttgtgaaggtaaaggaccgaacaagcgattggctaaacgggctgcggcggaggagatg
ttggacttgataggatttgtgaaaccgttgcctccacctggaaaaagtctattaaaaaag
aaccctgatgccgactattctcacacacaaattacgcattggacaggtccaccaagtccg
aaaggtgtggaagaaattccaagtttccctacaccatccgacatccaaacaaaaatatcc
atagaaacagggctagaggaaaaatctgatggttcgcccgacaccgaaaaacgacgagtc
actttcaattctgaagtttatgcatgcccacctccaggtgatcaaaactatcctaactca
attgtgcaatctctcaaaaaggacacgattgtcgaaggaaaattccgaaaactgaaaagg
tcaaaggaacaccgtcgagttttaacagcggatcaaatgcaggaattgtcggacaaagca
gaactgtttctcgattccgcgaaacaaggtttctcagcagatccttttgacactgctcac
catcaattggatcgactttcgcaatgtttcaaatttagtgttcattatacagcgttccct
caaacagaaatgaatcaagaattcacaatagtgtctctggggttggatactcctttggtt
ggccacggcaccggagatacaactgaagaagccgacgagagagcagctcttgatgcaata
accaaactcaagcaattagcgtcaataagtcttcaaccttga
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