Caenorhabditis briggsae (nematode): CBG_08327
Help
Entry
CBG_08327 CDS
T01054
Symbol
Cbr-taf-2
Name
(RefSeq) Protein CBR-TAF-2
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CBG_08327 (Cbr-taf-2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cbr01002
]
CBG_08327 (Cbr-taf-2)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbr03021
]
CBG_08327 (Cbr-taf-2)
03036 Chromosome and associated proteins [BR:
cbr03036
]
CBG_08327 (Cbr-taf-2)
Peptidases and inhibitors [BR:
cbr01002
]
Metallo peptidases
Family M1
CBG_08327 (Cbr-taf-2)
Transcription machinery [BR:
cbr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
CBG_08327 (Cbr-taf-2)
Coactivators
SAGA/TFTC/STAGA complex
CBG_08327 (Cbr-taf-2)
Chromosome and associated proteins [BR:
cbr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
CBG_08327 (Cbr-taf-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
Peptidase_M1_N
Motif
Other DBs
NCBI-GeneID:
8576527
NCBI-ProteinID:
XP_002634531
WormBase:
CBG08327
UniProt:
A8X6B2
LinkDB
All DBs
Position
IV:complement(12710692..12715403)
Genome browser
AA seq
1090 aa
AA seq
DB search
MDDGGRDDNNGFAIPFPPKPRNDVPSTSAAASAGPSAAAAQPPIIIEASSKYYVPGIREK
SKFRVLSQQVEISNICFATKSFHVRSELVILPCEASLRQLDFHIGKSILLPNELPEGSGK
KITINGIDCEYVRRRHLENVAQLAEQSKNIPSLDPRLSENLFENDYELQIAVPRDLKKKM
KHKKAVRLHIDTVVQEPTRGIQFVDFTGGREEDVHMFTYHTPYMSGTREWTVCLDEPDQL
ALWELTFEVDPDLVPVCSGELAEKRIWNGKILYRFSQTVPTNACNMGWAIGKFKLEPHPE
QPTIYTFALAGLDHFVNFTTLYLDKMVEFLEEKLSCRFPFPTLKVVFVDQGPEEIQCYSS
LLIVPTTLLYHKKIIDVVQEVRQKLIHAIAQQFFGCLISPGSWWNWWIVNSIARFLTSIY
VETKLGTAESRWQMKRYMDDVCDFEHQWGKIVLSPEKLIGKKMPLHVDPRHEYTASPLYV
EAMLKKGFLTIRMIQKRIGMEPFMRVLHRLLTVGLDMSEKKLLPPAWKHLLITTDSFFRN
IHSVTGKEIPSFLDQWVRVGGHASFAIKFDFNRKRNLVEMEIKQEDSEGNGRMQYTGPLS
VVVQEVDGAFSHTIQIDGAVSHAEISCHSKGRKQKKKKVPILTGEEIEIDLTNMDAESPI
LWLRIDHDYLLIREITISQPMFHWEYMLKYERDVIAQMEALERIQALPSAHSRSVIVDAV
SNERFFYRIRSRAAFVLTSVQNRKSEAIAVGTPVLINMFRENFGSKAVTNIPRSNNFVVT
AEKLQQYFVMQSIPQAISRLRKPSGECNEDVLPFLLDLIKFNDNSTNRYSDDFYRASLFN
SLAASIYPSEYLPYRVDLPENLSNEFRVMIKEFTYALNMDTVNPSYGRVVGIAALSGLYQ
LQKCGYLPLDSELLWTFANRNLCIQMRRCAITLIVDRISNDTNALDTRMEDLSRLLDLVE
TETDPSIRAMIPKLLAETPPFGTYNNTQFGSENTCNTEETANKLWSLCTNTRIDANIRSG
FLDVFFSLYALGTPPVLGGPDEASGIHRSYVTVPNAAAVLSTSQWHNSGYEAARRSPPRR
DFGDEMNLMH
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atggacgatggcggtcgcgacgacaacaacggattcgccataccgttcccaccaaagcca
cgtaatgacgttccgtcgacgtcagcggcggcgtcagcaggaccatcagcagcagcagca
caaccaccaataataatagaagcgtctagcaagtattatgtgccaggaattagggaaaaa
tcgaaatttcgcgttttatcacagcaggttgaaatctccaatatctgcttcgccaccaaa
agctttcatgttcgttcggaactcgtcattttgccatgcgaagcctctctccgacaacta
gattttcacattggaaagagcatcttacttccaaatgagctgcccgaaggatccggaaaa
aaaatcacaatcaacggaatcgattgtgaatatgtgcgaagacggcatttggaaaatgtg
gcacaattagctgagcaatcgaaaaatatcccaagtctcgaccctcgactcagcgagaat
ctttttgaaaatgactatgagctgcagatcgcggtgccgagagatctaaaaaagaagatg
aaacacaagaaagccgttcggctacacatcgatacagtagttcaagagccgacgcgtggt
attcaattcgtggatttcactggtggacgagaggaggatgttcatatgttcacctatcat
accccatatatgtcaggaactagagaatggacagtgtgtctcgacgaaccggatcaattg
gcactgtgggagttaacatttgaagtggatccagacctggttccagtttgttcgggagaa
ctagccgagaagagaatatggaatggaaagatactgtaccgattcagtcaaaccgtgccg
acgaatgcttgtaatatgggatgggcgataggaaagttcaaattggaacctcatccagag
caaccgacgatttatacttttgccttggctggcctcgaccactttgtcaacttcaccacg
ttgtatctggataaaatggtggagtttctcgaggaaaaactctcgtgtcgattcccattt
cccaccctgaaagtagtgtttgtcgatcagggaccagaggaaatccaatgctattcttca
cttctaatcgtccccaccacactactctatcacaaaaagatcattgatgtcgtgcaggaa
gtccgccagaaactcatccacgccattgctcagcaattcttcggatgtttgatttcaccg
ggaagctggtggaattggtggattgtcaattccatcgcaagattcttgactagtatctac
gtagagaccaaactgggtacagctgagtcacgatggcaaatgaagaggtatatggacgat
gtgtgtgatttcgagcatcaatggggaaagatagttttgtctccggagaaattgattggg
aagaagatgcctctccacgtggatcctcgacatgagtacacagcaagtccgctttatgtg
gaagctatgctcaaaaaggggtttctgacgattcggatgatacagaaaagaataggaatg
gagcctttcatgagagtgctccatagattgctgactgttggattggacatgagtgaaaag
aagctgttgccacctgcatggaagcatctcctgatcaccactgactccttcttccgtaac
attcattcagtgactggaaaagagattccatcgtttttggatcaatgggtacgggttgga
ggtcatgcttcgtttgcgatcaagttcgatttcaatcgaaaacgaaacttggtagagatg
gaaatcaagcaggaggattcagaaggcaatggaagaatgcagtacactggaccactttct
gtagtcgtccaggaggttgatggcgcttttagccatacgattcaaattgatggagccgtt
tcgcatgcggaaatctcttgtcactcgaaaggaagaaaacagaaaaagaagaaggttcca
attctaactggagaggaaattgaaatcgatttgacgaatatggacgcggaatcgccaatt
ctttggcttcgaatcgatcatgattatttgttgattcgagagatcacgattagtcaaccg
atgtttcattgggagtatatgttgaagtacgaacgagatgtgattgctcagatggaggcg
ttggagaggattcaggcactgccgtcggctcatagtagaagtgttatcgtggatgcggtg
tccaatgagagattcttttatagaatccgatcacgagccgcattcgtccttacatcagtt
caaaatcgaaaatccgaagcgatagctgtaggaactcctgtcctaattaatatgttccgc
gagaactttggctccaaagcagtcaccaacatccctcgctctaataatttcgttgtgacg
gctgaaaaacttcaacaatatttcgtaatgcaatcgatcccccaagcaatctctcgtctt
cgaaaaccatctggagaatgtaatgaagacgttcttccattccttcttgacctcatcaaa
ttcaacgataactcaacgaatcgatattctgacgatttctatcgagcatcacttttcaac
tcactggctgccagtatctatccatcagaatacctaccctatcgagtggatcttcccgag
aatctgagcaatgagttcagagtgatgattaaggagttcacatatgctctcaacatggat
acagtcaatccatcttacggacgtgtcgttggaatcgccgctttaagtggattgtatcaa
cttcagaagtgtggatatcttcccctggattctgaactactgtggacttttgccaatcga
aatttgtgtattcaaatgagaagatgtgctatcacactgatagttgatcgtatttccaac
gacactaatgccttggatacgcggatggaggatctttcgaggctgttggatctggtggag
acggaaacggatccatcgattcgggcgatgattccaaaattattggcggagacaccgcca
tttggaacttataataacacccaattcggttccgagaacacctgcaacacggaagaaacc
gccaacaaactatggtccctctgcaccaacacacgcatcgacgcaaatatcagaagtgga
ttccttgacgtcttcttctctctgtatgcccttggaacacctccagtactgggagggcca
gatgaagcaagtggaatccatcgatcctatgttaccgtacccaacgccgccgccgtcctt
tccacgtcgcaatggcacaatagtggatatgaagcggcgagacggtcaccgccacgacga
gatttcggcgatgagatgaatttgatgcattaa
DBGET
integrated database retrieval system
