Caenorhabditis briggsae (nematode): CBG_08416
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Entry
CBG_08416 CDS
T01054
Symbol
Cbr-dcap-1
Name
(RefSeq) Protein CBR-DCAP-1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBG_08416 (Cbr-dcap-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_08416 (Cbr-dcap-1)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CBG_08416 (Cbr-dcap-1)
mRNA degradation factors
5'-3' decay
Decapping complex
CBG_08416 (Cbr-dcap-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
WH1
DUF3597
ABC_tran_Xtn
Motif
Other DBs
NCBI-GeneID:
8576594
NCBI-ProteinID:
XP_002634601
WormBase:
CBG08416
UniProt:
A8X6I2
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Position
IV:complement(12327293..12328461)
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AA seq
340 aa
AA seq
DB search
MADAKKRAAAAELAAKNLLQLQKIDIAASKILDKIPFVAIYRIDPVKKEWMNSNCEGTLF
VYQRADRPYFSFLIANRNDPDDFIEPLTLNHILRHDGNFIYFHKDTNSIQALWFAQVEDA
QRIAALLQKLVDKLKGSTTEQAKAAAASSNKASPAPQLSTPVPTSAPAPAPTSKTIDLLQ
LIKSAQNSSKPTIAVKDSPPAISTPAPEQMPALLQKLMLKEPGLAMSADELERDLLKTAK
PHRNHLLQDFANSPSAISLAAISTKSVHGSEGDQDVDVAEGEVLEPFDASFVVGSGIETP
VLNKEQFLSAIVHLMQTDDEFVSQIHQAYVSALNRRLNID
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgctaaaaaaagagccgccgccgccgaattggctgcaaagaatctccttcaa
cttcaaaagatcgacatcgccgctagcaagattctagataagatcccgttcgttgcgatt
tatcgcatagatcctgtgaaaaaagagtggatgaattcgaattgcgaaggaactttgttt
gtgtaccagcgagccgatcggccatacttcagcttcctcatcgccaatcgcaacgatcca
gacgatttcatcgagccactcaccctgaaccacatccttcgccatgatggaaactttatc
tacttccacaaagacaccaattcgattcaagctctctggttcgctcaagtcgaagatgct
caacgaattgccgctctattacaaaaattggtggataaactgaaaggaagcaccacagaa
caggcgaaagcggctgctgcctcatcgaataaggcttcacccgctcctcaactatcgact
ccagtgccaactagtgccccggcccccgctccaacatccaagactatcgatcttctccaa
ttgataaaatccgctcagaactcatccaaacccacgattgccgtcaaagactcgccacca
gctatctctaccccggcgccagaacaaatgccagctcttcttcaaaagctcatgctaaaa
gagccaggactcgctatgtctgctgatgagctggaaagggatcttctgaagactgcgaaa
ccgcaccggaatcacttgcttcaggattttgccaactctccgtcggcgatctcgctggct
gcaatttccacgaagtctgtgcacggatccgagggagatcaggatgtagacgttgcggag
ggagaggttctggagccctttgacgcatccttcgttgtgggctctggcatcgaaacacca
gtgttgaataaggaacagttcctctctgccatcgtccatctgatgcagaccgacgacgaa
ttcgtctcccaaatccatcaggcttacgtcagcgccctcaaccgtcgtctcaacattgac
tag
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