Caenorhabditis briggsae (nematode): CBG_08494 Help Entry CBG_08494         CDS       T01054                                  Symbol Cbr-smg-2 Name (RefSeq) Protein CBR-SMG-2   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism cbr  Caenorhabditis briggsae (nematode) Pathway cbr03013   Nucleocytoplasmic transport cbr03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:cbr00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     CBG_08494 (Cbr-smg-2)    03015 mRNA surveillance pathway     CBG_08494 (Cbr-smg-2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cbr03019]     CBG_08494 (Cbr-smg-2) Enzymes [BR:cbr01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      CBG_08494 (Cbr-smg-2)     5.6.2.5  RNA 5'-3' helicase      CBG_08494 (Cbr-smg-2) Messenger RNA biogenesis [BR:cbr03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      CBG_08494 (Cbr-smg-2)    mRNA cycle factors     Common to processing body (P body) and stress granule      CBG_08494 (Cbr-smg-2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 UvrD-helicase Viral_helicase1 ResIII SLFN-g3_helicase DEAD NPHP3_N Helicase_RecD nSTAND3 AAA_16 PhoH ATPase AAA_22 Ribosomal_S13_N Motif Other DBs NCBI-GeneID:  8582437 NCBI-ProteinID:  XP_002640442 WormBase:  CBG08494 UniProt:  A8X6P8 LinkDB All DBs Position I:11268340..11272499 Genome browser AA seq 1051 aa AA seqDB search MDDSDDDYVKSQDEILTFVDTDDCAMSAATQDSQFDLDNQFSVPTQSSQTTDLLQGTDGT SDLPFHDVEDESDSEKSLTEDQAKLPEHACRYCGISDPLCVAKCTVCMKWFCNSNDGTPG GHIVHHMVRSQHKEAYTHKDSPCGDTQLECYRCASKNVFNLGFIPGKKDQVVVIICRTPC ANLAFQNDDNWSPEDWKSVIAEKQLLSWIVNVPSEEQVARARKITAQQAIRLEELWREHP EATLDDLNRPGLDREPDHVQLKYMDAHQYAKIFRPLVAIEAEYDRRMKESASQAVGTVRW EHGLRQSVLAFFHLPQFADGVMKLAKGDELRLKHNQTVDGSEWSRIGSVMKIPDNHSEEV GIEIRGQVDRSVMESRIMFTVDVVWNATTFHRQYNALDALVNDQKSVSPYLYHKLLGKPF DEMMLKFELPRRLSAPGLPDLNSSQSQAVKQVLTRPLSLIQGPPGTGKTVVSATIVYHLV QKTEGNVLVCSPSNIAVDHLAEKIHKTGLKVVRLCARSREHSETTVPHLTLQHQLKVLGG PELKKLIQLKEEIGELESKDDLRYRQLKRVKEHELLAAADVICCTCSSAADARLSKIRTR TVLIDESTQATEPEILVSIVRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLL GIRPFRLQVQYRMHPVLSEFPSNAFYDGSLQNGVTENERQMKGIDWSWPTPSKPAFFWHC SGAEELSASGTSFLNRTEAANVEKLVSKLIKGGVEPRQIGVITPYEGQRSFIVNYMQTQG TLNSKLYEGVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGIV VVGNAKVLSRHELWYELINHYKKKDMLYEGPISALKPFTMTLPKPIQKAKNNIAGANNRF GIKRMQYTYNEYKVVDPSQPRLPPTYANTQNLLSMSKSSRNFNQNVPVPAYMMDPLIYAA RGQKDRRREQRRQQAEAMDFSQDMSQSQANYGPGASQSQSQSQYMDGSSLSAWSQSQTRP RRGYQGSTQQMSQDMDDMEQKMSDLLMSQDC NT seq 3156 nt NT seq  +upstreamnt  +downstreamnt atggacgattcggacgacgactatgtcaaaagtcaagacgaaattctcaccttcgtcgac accgacgactgtgcaatgtccgcggccactcaggattctcaatttgatttggataatcaa ttcagtgttcccactcaaagttcacagaccaccgatttgctgcaagggaccgatggtacc agtgatttgccgttccatgacgttgaagacgaatcggatagtgaaaaatcgctaacagaa gatcaagcgaagttgccagagcatgcttgtcgttactgcggaatctcggatccactgtgc gtcgcaaagtgtacagtctgcatgaaatggttctgtaattccaacgatggaaccccagga ggtcatattgtacatcatatggtcagaagtcaacataaagaggcctacacccacaaggat tctccatgcggtgatactcaacttgaatgttatcggtgtgcctcgaagaacgtcttcaac ctcggtttcattccgggaaagaaggatcaagtggttgtgataatctgtcgtacaccatgt gcaaatctggcatttcaaaacgacgataactggtcgccagaagactggaaatcggttatc gctgagaaacagctgctttcgtggattgtcaacgtgccaagcgaggagcaagtagcaaga gctaggaagattacagctcagcaagcaatacgtctcgaagaactctggcgcgagcatcca gaagcgacactcgacgacctgaacagaccaggactcgatagagagccggatcacgtccaa ttgaagtacatggacgctcatcagtacgccaagattttccgtccgcttgtcgccattgag gcagaatacgatcgtcggatgaaagaatcagcatcacaagcagtgggaactgttcgttgg gaacacggactccggcaatccgttcttgcctttttccatctcccacaattcgctgatggg gtcatgaaactcgctaaaggagatgaattgcggttgaagcataaccaaacagtggatggt tcggaatggagtaggattggaagtgttatgaagattcctgataaccacagtgaagaagtt ggaattgagattcgcggccaggttgatcgatccgttatggagagtcgtatcatgttcact gttgacgtcgtttggaacgctaccaccttccatcgtcagtacaatgctctggatgctctt gtcaacgaccagaagtctgtatctccatacctttatcacaagcttctcggaaaaccattt gatgaaatgatgctcaagttcgagcttcctcgtcgtttgtctgctccaggacttccggat ctgaacagctcccaatcgcaagctgtgaagcaagtgcttacccggccactcagtcttatt caaggaccaccaggaactggaaaaactgtcgtttctgccactattgtctatcatttggta cagaagactgagggaaatgtgttggtttgctcgccgagtaacattgcagttgaccatttg gctgagaagattcacaaaacaggacttaaagttgtcagattgtgtgcgcgttctcgggaa cactctgaaaccactgtgcctcatttgacgcttcaacatcaattgaaagtattgggagga ccggaactcaagaaattgattcagttgaaggaggaaatcggagagctggaatcgaaagac gacctgcggtatcgtcaattgaaacgtgtcaaagagcatgaacttctggcagctgctgac gtcatctgctgcacgtgctcttcagcagccgacgcaagattgagcaaaatccgaacaaga actgttttaatcgacgagagtacacaagccacggagcctgaaatcttggtttctatcgtg agaggagttcgtcaattggttctcgtcggagatcattgtcaactaggaccagttgtcatt tgcaaaaaggcagcgatcgctggactcagccagtctcttttcgagcggctagtacttctt ggcatccgcccattccgtcttcaagttcaatatcgtatgcacccagtgctctccgagttc ccaagtaacgccttctatgatggaagtcttcagaatggtgtcacagagaatgaacggcaa atgaagggcatcgactggagttggccgacgccaagcaagccagctttcttctggcattgc agtggagctgaggaactttcagcttcgggaacctctttcctgaatagaactgaagctgcg aatgtggagaagctagtgtcgaaattgatcaaaggaggagttgaaccacgtcaaatcgga gtcatcacaccttacgaaggtcaacgcagtttcatagtcaactacatgcaaacacaagga acgctgaactcgaagctctatgaaggtgttgaaatcgccagtgtcgacgcattccaggga cgtgagaaggactacattattgtgacttgtgttcgatccaatgatatactcggaatcggc ttccttagcgatcctcggcgtctgaatgtggctatcactcgtgcaaaatatggaatcgtg gttgttggaaatgctaaagtgctctcaagacatgagttgtggtatgagctgatcaatcat tataagaagaaggatatgttgtatgagggaccaattagtgcattgaaaccattcacaatg acacttccaaagccaattcagaaggcgaagaacaatattgcgggagccaacaaccgcttc ggcatcaaacgaatgcaatacacttataatgagtacaaagttgtcgatccatcgcaacca cgtcttccaccaacctacgcgaatacgcagaatcttctcagcatgagcaaatcgtctaga aatttcaatcagaatgttccggtgccggcttatatgatggatccattgatttatgctgca aggggacagaaagatcgtcgtcgtgagcaacgccgtcaacaagccgaagcaatggatttc tcccaagacatgtcccaatcgcaagcgaactacggcccaggagcctcccaatcgcagtct caatcccagtacatggacggctcctcgctatccgcatggtcgcaatctcaaaccagacca cgtcgaggataccaaggatccactcagcagatgtctcaagatatggacgatatggagcag aagatgtccgatttgctgatgtcgcaagactgttga

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