Caenorhabditis briggsae (nematode): CBG_08556
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Entry
CBG_08556 CDS
T01054
Name
(RefSeq) Protein CBG08556
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBG_08556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_08556
Enzymes [BR:
cbr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
CBG_08556
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
CBG_08556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNase_T
Motif
Other DBs
NCBI-GeneID:
8578264
NCBI-ProteinID:
XP_045093824
WormBase:
CBG08556
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Position
V:8180818..8182728
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AA seq
556 aa
AA seq
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MVIIKDSNFLELAPQLRKTLLQSDFVSIDFEFLGLDTTAISLHDTAEKRYEILRANVIKY
RPCQLGLSFFKQKSNKGYKADSYSIPLCQRFGASDTSISVNSLRFLLENNFDLNQVITDG
VEFCTRAEIKKFEEALSKGTALSYISKDKQMKVEQLKVMLHEKCFRVKAEMITHTTEEPS
QDCRLIINSDKPVSLKMPAGLCSVETYIAIHDITNSFPHLLFSLNEKDKSLDVTMLPETM
TETENKKQTRMRCTESFEGISAILEAAMMMRKVIVGHNSLLDAMYMYHYFFSSLPLKYRN
FKREFNSLFPKVIDTKILAQVIRIDLPGVGDSLERLGDYFGTEKSNKTVPPELRGYIGPW
MNPLDDDSENYYHNAGFDSYITGEVFLKLAHTYINRRNGFKNESIEFKRIIQYLEAPIQN
RLPFQLMDMGCCHLAGEDSKGCRPDVITIVRRDLRPIGEEEFKHQEKILSSLMATYQFDI
EWSKDRKELLLATNTPGSYAFLCEKFSKNDNLSPLDELEAGKKWTFEQRQTSWRSFKDAS
MGVVDFMNRFVYITSA
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggtcatcatcaaggactcgaacttcttggaattagcacctcaactgcgaaagacactt
cttcagtctgatttcgtttcaatcgactttgaatttctcggactcgacacaactgcaatc
tcccttcacgacactgcagagaaacgatacgaaattctccgagccaatgtaatcaaatac
cgtccatgtcaacttggattgagctttttcaaacaaaaatctaataaaggatacaaagcg
gacagctactcaattccactttgtcaaagattcggcgcctctgatacaagcatttcggta
aactccctgcgttttttgttggagaataatttcgatttgaatcaagttattactgatggc
gttgagttttgtacacgagcggagatcaaaaagttcgaagaagctttatcaaaaggaact
gcattgagctatattagcaaggacaaacaaatgaaagtagaacagctgaaagtgatgcta
catgagaaatgttttcgtgtgaaagcagaaatgatcacccacacaacagaagaaccgagt
caggactgtcgactgataatcaattcagataagccggtatcactaaagatgcctgctgga
ttatgtagtgtggaaacctacatcgccattcacgatatcacgaatagtttcccacacctc
ctgttcagtttgaacgaaaaagataaatcattggatgttacgatgctccctgaaacgatg
acggaaaccgagaacaagaaacagactagaatgcgatgcacagagtctttcgaaggaatt
tctgcaattttggaagccgcaatgatgatgagaaaagttatagttggccacaacagtctt
cttgatgcaatgtacatgtatcattatttcttctcctctcttcctttgaaatatcgaaat
ttcaaaagagagtttaacagccttttcccaaaagtcatagatacaaaaattcttgctcaa
gtcatacgcatcgatcttcctggagttggagattcgctcgaaaggctgggagactatttt
ggaacggaaaaatcgaataagactgtgccaccagagcttcgcggttatattggaccttgg
atgaacccactcgacgacgattcggagaactattatcacaacgctggattcgatagctat
atcacaggagaagtctttttgaagttagctcacacgtatatcaacaggagaaatggattc
aaaaacgaaagcatcgagttcaaacgaatcatacagtatctcgaagcacctattcagaat
cgcctaccgtttcaactcatggatatgggatgttgtcatttagccggtgaagattccaaa
ggttgtcgtccggatgtaatcactattgtcagacgagacttacgtccgattggggaagaa
gaattcaagcatcaagagaaaatcctctcgtcgctaatggcaacgtatcagtttgatatt
gaatggtcaaaagatcgcaaagaacttcttctcgccacaaatactccaggatcatacgcg
tttctgtgtgaaaaattctcgaaaaatgacaatctctctccgttagatgagctggaagcc
ggaaagaagtggactttcgagcaacgacagacatcgtggcgcagtttcaaagacgcgagc
atgggagttgttgactttatgaataggtttgtctatataacatctgcttga
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