KEGG   Caenorhabditis briggsae (nematode): CBG_08556
Entry
CBG_08556         CDS       T01054                                 
Name
(RefSeq) Protein CBG08556
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CBG_08556
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_08556
Enzymes [BR:cbr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     CBG_08556
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     CBG_08556
SSDB
Motif
Pfam: CAF1 RNase_T
Other DBs
NCBI-GeneID: 8578264
NCBI-ProteinID: XP_045093824
WormBase: CBG08556
LinkDB
Position
V:8180818..8182728
AA seq 556 aa
MVIIKDSNFLELAPQLRKTLLQSDFVSIDFEFLGLDTTAISLHDTAEKRYEILRANVIKY
RPCQLGLSFFKQKSNKGYKADSYSIPLCQRFGASDTSISVNSLRFLLENNFDLNQVITDG
VEFCTRAEIKKFEEALSKGTALSYISKDKQMKVEQLKVMLHEKCFRVKAEMITHTTEEPS
QDCRLIINSDKPVSLKMPAGLCSVETYIAIHDITNSFPHLLFSLNEKDKSLDVTMLPETM
TETENKKQTRMRCTESFEGISAILEAAMMMRKVIVGHNSLLDAMYMYHYFFSSLPLKYRN
FKREFNSLFPKVIDTKILAQVIRIDLPGVGDSLERLGDYFGTEKSNKTVPPELRGYIGPW
MNPLDDDSENYYHNAGFDSYITGEVFLKLAHTYINRRNGFKNESIEFKRIIQYLEAPIQN
RLPFQLMDMGCCHLAGEDSKGCRPDVITIVRRDLRPIGEEEFKHQEKILSSLMATYQFDI
EWSKDRKELLLATNTPGSYAFLCEKFSKNDNLSPLDELEAGKKWTFEQRQTSWRSFKDAS
MGVVDFMNRFVYITSA
NT seq 1671 nt   +upstreamnt  +downstreamnt
atggtcatcatcaaggactcgaacttcttggaattagcacctcaactgcgaaagacactt
cttcagtctgatttcgtttcaatcgactttgaatttctcggactcgacacaactgcaatc
tcccttcacgacactgcagagaaacgatacgaaattctccgagccaatgtaatcaaatac
cgtccatgtcaacttggattgagctttttcaaacaaaaatctaataaaggatacaaagcg
gacagctactcaattccactttgtcaaagattcggcgcctctgatacaagcatttcggta
aactccctgcgttttttgttggagaataatttcgatttgaatcaagttattactgatggc
gttgagttttgtacacgagcggagatcaaaaagttcgaagaagctttatcaaaaggaact
gcattgagctatattagcaaggacaaacaaatgaaagtagaacagctgaaagtgatgcta
catgagaaatgttttcgtgtgaaagcagaaatgatcacccacacaacagaagaaccgagt
caggactgtcgactgataatcaattcagataagccggtatcactaaagatgcctgctgga
ttatgtagtgtggaaacctacatcgccattcacgatatcacgaatagtttcccacacctc
ctgttcagtttgaacgaaaaagataaatcattggatgttacgatgctccctgaaacgatg
acggaaaccgagaacaagaaacagactagaatgcgatgcacagagtctttcgaaggaatt
tctgcaattttggaagccgcaatgatgatgagaaaagttatagttggccacaacagtctt
cttgatgcaatgtacatgtatcattatttcttctcctctcttcctttgaaatatcgaaat
ttcaaaagagagtttaacagccttttcccaaaagtcatagatacaaaaattcttgctcaa
gtcatacgcatcgatcttcctggagttggagattcgctcgaaaggctgggagactatttt
ggaacggaaaaatcgaataagactgtgccaccagagcttcgcggttatattggaccttgg
atgaacccactcgacgacgattcggagaactattatcacaacgctggattcgatagctat
atcacaggagaagtctttttgaagttagctcacacgtatatcaacaggagaaatggattc
aaaaacgaaagcatcgagttcaaacgaatcatacagtatctcgaagcacctattcagaat
cgcctaccgtttcaactcatggatatgggatgttgtcatttagccggtgaagattccaaa
ggttgtcgtccggatgtaatcactattgtcagacgagacttacgtccgattggggaagaa
gaattcaagcatcaagagaaaatcctctcgtcgctaatggcaacgtatcagtttgatatt
gaatggtcaaaagatcgcaaagaacttcttctcgccacaaatactccaggatcatacgcg
tttctgtgtgaaaaattctcgaaaaatgacaatctctctccgttagatgagctggaagcc
ggaaagaagtggactttcgagcaacgacagacatcgtggcgcagtttcaaagacgcgagc
atgggagttgttgactttatgaataggtttgtctatataacatctgcttga

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