Caenorhabditis briggsae (nematode): CBG_08977
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Entry
CBG_08977 CDS
T01054
Name
(RefSeq) Protein CBG08977
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CBG_08977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbr03041
]
CBG_08977
03009 Ribosome biogenesis [BR:
cbr03009
]
CBG_08977
Enzymes [BR:
cbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CBG_08977
Spliceosome [BR:
cbr03041
]
Complex A
U2 snRNP components
U2 related factors
CBG_08977
Complex B
CBG_08977
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
CBG_08977
Ribosome biogenesis [BR:
cbr03009
]
Eukaryotic type
90S particles
Helicases
CBG_08977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
nSTAND3
AAA_19
SRP54
ResIII
ABC_tran
TsaE
T2SSE
PhoH
Microtub_bd
AAA_7
AAA_30
Motif
Other DBs
NCBI-GeneID:
8583120
NCBI-ProteinID:
XP_045093926
LinkDB
All DBs
Position
III:complement(4410002..4412313)
Genome browser
AA seq
754 aa
AA seq
DB search
MSSRHRLDLDGSGRGDRRRSRSPKKRSRSRSPHRHSSPDRQRQTGAIGNMKVSNSFDSKP
SSNDVQVQINPYNSQPYSNRYWTIWEKRSQLPVWEYKEKFMELLRTNQCITLVGETGSGK
TTQIPQWAVEFMKQQQQGLPPSQAKLVACTQPRRVAAMSVATRVAEEMDVVLGQEVGYSI
RFEDCISERTVLKYCTDGMLLREAMNSPLLDRYKVLILDEAHERTLATDILMGLIKEIVR
NRADIKVVIMSATLDAGKFQRYFEDCPLLSVPGRTFPVEIFFTPNAEKDYLEAAIRTVIQ
IHMCEETEGDILLFLTGQEEIEEACKRIDREITNLGSDIGALSCIPLYSTLPPAAQQRIF
EPAPPNRPNGAISRKCVVSTNIAETSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVCPI
SKASAMQRAGRAGRTKPGKCFRLYTEAAYGSEMQDQTYPEILRSNLGSVVLQLKKLGTED
LVHFDFMDPPAPETLMRALELLNYLQAINDDGELTELGSLMAEFPLDPQLAKMLITSTEL
NCSNEILSITAMLSVPQCFVRPNEMKKEADEAKARFAHIDGDHLTLLNVYHAFKQNQEDP
QWCYQNFINYRTMKTADTVRTQLARVMDKFNLRRVSTDFKSRDYYLNIRKALVAGFFMQV
AHLERSGHYVTVKDNQLVNLHPSTVLDHKPEWALYNEFVLTTKNFIRTVTDVRPEWLLQI
APQYYDLANFPDGDTKRKLTTVMQTLQRNSGRGY
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaagacaccggttggatttggacggcagcggacgcggagacaggagaaggtct
cgttcacctaaaaaacgctctagatctcgctctccccatcgacactcgtccccggacaga
caacgacaaacaggggcgattggaaacatgaaggtaagcaatagcttcgattcgaaacca
tcaagcaatgatgttcaggttcaaatcaatccctacaatagtcaaccctacagcaaccgg
tattggaccatttgggagaaacgaagtcagttgccagtttgggagtacaaagaaaagttc
atggagttgttgcggaccaatcagtgcatcactttggtcggagaaactggatctggaaaa
actactcaaattccacaatgggcagttgaattcatgaagcagcaacagcagggattacca
ccaagtcaagccaaactcgtcgcctgtacccagccaagacgtgtggcagcaatgagtgtc
gcaacaagagtagcagaagaaatggatgtggttctcggtcaagaagtgggttacagtatt
cgtttcgaagactgtatcagtgaaagaaccgtgctcaaatattgtactgatggtatgctg
ttaagagaagcgatgaatagtccattgctcgatcgttacaaagttttgattctcgacgaa
gctcacgaacgtacactagccactgatattcttatgggattgatcaaagaaatcgtgagg
aatcgagcggatattaaagtcgtaatcatgtctgcgactttggatgctggaaagttccaa
agatattttgaggattgtccgttgctaagtgttcctggtagaactttccccgtcgaaatt
ttcttcacaccaaatgccgagaaagattatctggaagctgccattcgtactgtcatccaa
attcacatgtgcgaagaaaccgaaggtgatattctactgttcctgactggtcaagaagaa
atcgaagaagcgtgcaagaggatcgatcgagaaatcacaaatctgggatcagatattgga
gctctcagttgcattcctctgtattccacactgcccccagctgcccagcaacggatcttc
gaaccagctccaccaaatcgtccaaacggagccatcagtcgcaaatgcgtcgtttccact
aatatcgccgaaacatctttgaccattgatggagttgttttcgttattgatccaggattc
tccaaacagaaagtctacaatccaagaattcgtgtcgagtctctcctcgtttgtccaatt
tcgaaggcgtcggctatgcaaagagcaggacgtgctggaagaacgaaacccggaaagtgc
ttcagactttacactgaagctgcatatggctctgaaatgcaagaccaaacgtaccctgag
attttaagatctaatcttggctctgttgtgttacaactgaagaagctcggaactgaagat
cttgttcacttcgatttcatggatccaccagcaccagaaactctaatgagagcattggaa
ttgctcaactatcttcaagccatcaacgacgacggagaactgactgaactcggaagtttg
atggcagagttccctcttgaccctcaacttgcaaagatgctcattacatcaacggaattg
aattgctcaaacgaaattttatcgatcaccgctatgttgtcagttccacaatgcttcgtt
cgtccaaacgaaatgaagaaggaggccgatgaagcgaaagctcgtttcgctcatatcgac
ggagatcatttgacacttttgaatgtttatcatgccttcaagcaaaaccaagaagatcct
caatggtgttatcaaaacttcatcaactacagaacaatgaaaaccgcggacactgttcgc
acacagttggctcgagttatggataagttcaatttgcgccgagtttcaacggatttcaag
tctcgtgactactacctcaacatcagaaaagcactcgtcgctgggttcttcatgcaagtt
gctcatctggagagaagtggacactacgtcactgtgaaagacaaccaacttgtgaacctt
cacccttcaaccgtcttggatcacaagccagaatgggcactctacaatgaattcgtgcta
accacgaagaacttcatcagaaccgtaacggatgtgcgtccagaatggcttctacaaatc
gcgcctcaatactacgatctcgccaatttccccgatggagataccaagagaaaattgaca
actgtgatgcaaacactgcagcgtaactcaggcagaggatattga
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