Caenorhabditis briggsae (nematode): CBG_09112
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Entry
CBG_09112 CDS
T01054
Name
(RefSeq) Protein CBG09112
KO
K14792
rRNA biogenesis protein RRP5
Organism
cbr
Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cbr03009
]
CBG_09112
Ribosome biogenesis [BR:
cbr03009
]
Eukaryotic type
90S particles
Other 90S particles
CBG_09112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
S1_RRP5
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
TPR_14
HAT_PRP39_N
Suf
HAT_Syf1_CNRKL1_N
TPR_19
TPR_16
ARM_TT21
ARM_TT21_C
ANAPC3
CDC45
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
8583237
NCBI-ProteinID:
XP_045093881
WormBase:
CBG09112
LinkDB
All DBs
Position
III:complement(3851684..3857292)
Genome browser
AA seq
1732 aa
AA seq
DB search
MVKLEEVTNEKYFPRGGGSDRPKPTKEGFPTKGLKRKSAVPEQNDAKKAKEESSWIPKVD
DFIDGLTGLGVVAELFDDGVLLHTAGTHTVKIHAAEVSANFTDLFNENKIEIKDAFQIGQ
MVPFRVISKKSGNDKGRSKASCNPARLNKHLSPNMLVAGLVIHTAVTSLEEKGAILDVGL
DQMTGFIEKSQFPAAGLREGQPLVVRVLSTTSRVVKVTSFVEQDNLNMSSCEKLQLNHLM
PGTILECEPTGDAVTAGVIVNIGNGLKGILPRRNLPPRLRENPEKLGKAIRAVVMFCQQN
SKVLVLNAHPDIVAVSRVEKRTSFEGIQIGDKVQCTVVDVIPTKSIVYFTLPPTDGKKSL
VTAVSSRGLLEKPDSVATEYEVGTEKFCRVTGFRYADRAITVSTRKDILNQKITKYQDAK
CGDVLDARVHHVAKNGVYFSVCNFVQAFAPMSLLSDKSLNLQKLKAKFQVGTETKCRVWQ
ICDQRKNLIVTCREQIIALKGPSANSVEELEIGNTLPCIVKKVFDSGVVLLATFNNICGV
LRKEAAIHLPATPKVNDFVVANVEKVEDNNRVVFVLRDANPNAASQNSQKKLAQRAKPAD
GGVNIGKVYKGSLTAKKGEKANVTFTGENKKEVFASVDDHLLSDLLDAPIGLTKRLLAEN
KEEVSRIVPMGKIAAVNRACVKRSVARFVKGMKLPKKIEDLKEGQVVVGVVGQIITNLGV
FVEVVGGAGLIGKVFERKNAKSSSELLEVGQVVIGKIESVDVAKKSFLIDPCTEMDNGEH
MLEQYALPLLESIVEEVKWLAEHSTYPAPGSKVNARVTKELDDLTLVEFEHNGKKIAGVV
PKKAGDDSSSEKETPKKKKNATKTLIVVDINHSTNEVVLAALATDDAKIVAILSDEKVKL
HMVVDAKEPKLVSEGVYIATRGGGDVDDVARTNLIKKEFIGSAKPAENKREDGGEQGKKS
IKNFGIYTGIVLGQTKFEENRKKNSLFVDIRLPGDNIGHLHVSEFPPNLLNAKNPLEEFL
ERNKNKQVVVRIIGFEKGSQGSKIAQLTMIPSKIQAGKVRASVLSFPSNYKVGDIIKCFA
SATLTDKQNLKVEVNPLWSGSISRENVSEDLKATSADGGIVDLSLSKGEMRQAKVIAVER
KRMSLDLNLNISDVETEFKIGTAATGRVIYVSKTYIRLKLSSGQQAVLTPTATTDKYESV
EEIAEKQLAMGQLVDVVGLKVEGSPLRYYVAMKSRFNSKSSDPKRQLLTDATAIKEGTQL
DGIVGNASKGSLFIELGPGIVGRIPVNEENQDILEIGTSSVVRVTAAKVAKNEIVLKLDD
ILIRKWTKKPERKRHASKSEGTPSKVALLEEEKTSETVETEDPGFDWSNKGFRNEDLAAV
GKLTSNAEDDSDEDDEDEETEEVSDEEDASDAEEDVDDEEEDVDDEEDSEDDEEKKVELI
EKSEEEHSRLVRSDPNSAINWIEYMSLFVEKSDLKAARKTAEEALSAINPTESEELLKMW
TAYLNMEVAYGDSTTVDEVFKRACKNANSYTIYRTLAKIYQKFNKHAEAKHILEQMVSKF
RANKLEVWTLLAEHLMNQKEQKGARDLLPRALKSAPKAQQRECGVSGLQRFETWILSDIQ
LISKFAQLEFKLGDAERGRTLLEGLVTAHPKKTDLWLVYADAALKHLGIEHARKILERAC
NRELSVHKMRPLYKKWLEMESKHGDAASIQLVKSKAESFLQSVADDVMEEED
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atggttaaacttgaagaggtaacaaatgaaaaatatttccctcgtggtggaggttctgac
agaccaaaaccaactaaagaagggttcccaactaaaggtttgaagagaaagtcagcagtc
ccagagcaaaacgacgctaagaaggcaaaagaagagtcatcttggattcctaaagttgac
gatttcattgatggtctaactggtcttggagttgtagctgagctttttgatgatggagtc
ttattgcacaccgctggaactcacaccgtcaaaattcacgcagcagaagtctccgcaaat
tttacggacctgttcaacgagaataaaatcgagatcaaggatgcgttccagatcggtcaa
atggttccattcagagtgattagcaaaaagtctggaaatgataaaggaagatcgaaagca
agttgtaatccagcgagacttaataaacacctctctccaaatatgcttgttgccggtctt
gtaattcataccgcagtgaccagtttagaagaaaaaggagcgattttggatgttggactc
gatcaaatgacaggattcattgagaaatcacagttcccagctgcaggattgagagaagga
cagccactcgttgttagagttctttccacaacttctcgagttgtcaaagttacttcgttt
gttgaacaagacaatttaaatatgtctagttgtgagaaacttcaattgaatcatttgatg
cctggaaccattctggagtgtgagccaacaggagacgctgtaactgcaggagttatcgtt
aacattggaaacggattgaagggaattctcccacgccgtaacttgccaccacgtcttcga
gagaatccagagaagcttggaaaagcaattcgtgctgttgtcatgttctgccaacagaat
tccaaggtccttgtactcaacgctcatccggatattgttgcagtgagccgtgttgaaaag
cgaacatcttttgaaggaatccaaattggagacaaagtacaatgcactgtagtcgatgtg
attcccacgaagagtattgtatacttcactttgccgccaacagatggaaagaagtctctt
gtcactgctgtctcgtcgcgaggtcttttggaaaagccagattcggtcgcaacagaatac
gaagtcggaacggagaagttctgcagagttacaggattccgttatgctgatagagcaatc
acagtttctacgagaaaagatattctgaatcagaagatcacaaaataccaggatgcaaaa
tgcggtgacgtccttgatgctcgagttcatcatgtggccaaaaatggagtctacttttcg
gtgtgcaactttgtccaagccttcgctccaatgagtttgctatctgataagtctctaaat
ctacaaaagctcaaagccaaattccaagttggtacagaaaccaagtgtcgagtatggcaa
atttgcgatcagaggaaaaatttgattgtcacatgccgcgaacaaatcatcgcattaaaa
gggccatcagcgaatagtgtagaagagttggagattggaaatacacttccatgcatcgtc
aaaaaagtatttgattctggagtggtccttctcgccacattcaataacatttgtggagtt
ctccggaaagaagccgccattcacttaccagcaactccaaaagttaacgattttgtggtt
gctaacgttgagaaagtcgaggataacaatcgagtcgtttttgtcctccgtgatgcgaat
ccaaatgctgcatctcagaattctcaaaagaagttggcccaaagagcgaaaccagctgac
ggaggagttaatatcggaaaggtttacaagggatctctgacagcgaagaaaggagaaaag
gcgaatgttacgttcaccggagagaacaagaaagaagtattcgcttctgttgatgatcat
ctactttctgatctcctcgatgctccaatcggtctaacgaaacgattgctcgctgaaaac
aaagaagaggtctcccgaatcgttccaatgggaaaaatcgcagctgtcaatagagcgtgt
gtgaagagatctgtagctcgatttgtgaaaggaatgaagctaccgaaaaagattgaagat
ttgaaagaaggacaagttgtggttggagtcgtaggacaaatcatcactaatctcggagta
tttgtggaagttgttggaggagcgggtcttattgggaaggtttttgagagaaagaacgcc
aagagctcatcggaactcctcgaagttggtcaagtggtgatcggaaagattgagagcgtt
gatgtcgccaaaaagagcttcttgattgatccatgtactgaaatggacaatggcgaacat
atgcttgagcaatacgcccttccactcttggaatcaattgtcgaagaagtgaaatggctc
gctgagcactcgacttacccagctccgggctccaaagtgaacgcaagagtcaccaaagag
ctcgatgatttgacacttgttgaattcgagcataacggaaagaagattgctggagtggta
ccgaagaaagctggtgatgattcttcttctgaaaaggagacacccaaaaagaaaaagaac
gccaccaagacattgattgttgtggatatcaatcactctacaaacgaagtcgttctcgct
gctctagccactgatgacgctaaaattgttgccatcctctctgatgaaaaagtgaaactt
cacatggtcgtggatgcgaaggagccgaagttggtgtcagaaggagtttatattgcaacc
agaggaggcggtgatgttgatgatgttgctagaaccaatcttatcaagaaggaattcatt
ggaagtgccaaaccagcagaaaataaaagagaggatggtggagagcaaggaaagaagagt
atcaagaactttggaatctacacaggaatcgttttgggacaaacaaagtttgaagaaaac
cgaaagaagaattcgctgttcgttgatattcgtctacctggagataacattggacacctt
catgtttctgaattcccgccaaatcttctcaacgccaagaatcctttggaagagttcttg
gagagaaataagaataagcaagtggtagtgagaattattggatttgaaaaaggatcgcaa
ggttctaaaatcgctcaactcaccatgatcccatcgaaaattcaagccggaaaagttcgt
gcatcagtcctttccttcccatcgaactacaaagtcggagatattatcaaatgcttcgca
tcagccacacttacagataagcaaaatctgaaagtagaagtgaacccattgtggagtgga
tctatctcaagggaaaatgtttctgaagacttgaaagcaacttctgccgatggaggaatc
gttgatttgtcactttccaaaggcgagatgcgtcaagcaaaagtcatcgctgttgaaaga
aaaagaatgtctttggacctgaatctcaacatttccgatgtagaaactgaattcaagatt
ggcaccgctgctactggacgtgtcatttatgttagcaaaacgtatattcgtctgaaactg
tcttctggacaacaagctgttttaactccaactgctaccactgataaatacgagagtgtg
gaggaaatcgctgagaaacaactggcaatgggacagttagtcgatgtcgttggtttgaaa
gtcgaaggcagtccgttacgatactatgttgctatgaagagccgcttcaactcgaaatct
tctgatccaaagagacagttgctcaccgacgccacagcgatcaaggaaggaactcaactc
gacggaatcgttggtaacgcttccaaaggatccctattcatcgaactgggccctggtatc
gttggacgtattccagtgaatgaggagaatcaggatattttggaaatcggaacaagcagt
gtggttcgtgtcaccgccgcaaaggttgccaaaaacgagattgtgctgaagctagacgat
attctgatcagaaagtggaccaagaagccagaaagaaagagacatgcatcgaagagcgaa
ggaactccatctaaggttgctctgctagaagaggagaagacgtcggagactgtagaaaca
gaagatccaggattcgattggtcgaacaagggcttcagaaatgaagatttggcggcagtt
ggaaagttgacaagtaatgccgaagacgatagtgatgaagatgatgaggacgaggagact
gaagaagtcagtgacgaggaagatgcttctgatgccgaagaagacgttgatgatgaggaa
gaagacgttgacgatgaagaggattcagaagacgacgaggagaagaaggttgagctgatt
gaaaagtcagaggaagagcactcaagattggttcgaagtgacccgaactctgctatcaac
tggattgagtacatgagtctttttgtggaaaaatctgatttgaaggcagcgagaaagact
gcagaggaggcgctatctgcgattaatccaactgaatccgaagagcttctgaagatgtgg
actgcctatctgaacatggaagtcgcctacggagactccaccaccgtcgacgaggtcttc
aaacgcgcctgcaaaaatgccaattcctacacaatctaccgaactctggcgaagatctat
caaaagttcaataagcacgccgaagccaagcacattttggagcagatggtcagcaagttc
cgtgccaacaaactcgaagtttggactttgctcgccgagcacttgatgaaccaaaaagag
cagaagggggcgagagatttactcccgagggcattgaaaagtgcgccaaaggcccaacag
cgtgagtgtggtgtttccggtttacaacgttttgaaacatggattctttcagatatccaa
ctgatttctaaattcgcccaactcgaattcaagctcggagatgcagaacgcggaagaacc
cttctcgaaggactcgtcactgctcatcccaaaaagacggatctctggctagtctacgct
gacgctgcactcaagcatcttggcattgaacatgctcggaaaatcctggagagagcctgt
aaccgagagctgtcggtccacaagatgcggccgttgtacaagaagtggttggaaatggag
agtaagcatggagacgccgcatcgattcaactcgtaaagtcgaaggcggaaagcttcttg
cagtctgttgctgatgatgtcatggaagaggaagattaa
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