Caenorhabditis briggsae (nematode): CBG_09177
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Entry
CBG_09177 CDS
T01054
Symbol
Cbr-cgh-1
Name
(RefSeq) Protein CBR-CGH-1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBG_09177 (Cbr-cgh-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_09177 (Cbr-cgh-1)
03036 Chromosome and associated proteins [BR:
cbr03036
]
CBG_09177 (Cbr-cgh-1)
Enzymes [BR:
cbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBG_09177 (Cbr-cgh-1)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
CBG_09177 (Cbr-cgh-1)
mRNA degradation factors
5'-3' decay
Decapping complex
CBG_09177 (Cbr-cgh-1)
Chromosome and associated proteins [BR:
cbr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
CBG_09177 (Cbr-cgh-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
EVA_Class_A
Motif
Other DBs
NCBI-GeneID:
8584608
NCBI-ProteinID:
XP_002642614
WormBase:
CBG09177
UniProt:
A0AAE9JDX0
A8X887
LinkDB
All DBs
Position
III:11987782..11989324
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AA seq
429 aa
AA seq
DB search
MSAADQQQLVPANGDENWKAALNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEK
GWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTR
ELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVA
KMENCKTLVLDEADKLLSQDFQGILDRLINFLPKERQIMLYSATFPQTVTTFMQKHMHKP
YEINLMEELTLLGVTQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKIT
EIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNA
ETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYVADQQL
VDAAEDTTA
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcggcggaccaacaacaactcgttcctgctaacggcgatgaaaactggaaggca
gctctcaacttgccagctaaggaccggcgcttcaagacagctgatgttactgacaccaag
ggagtcgaattcgaggacttctgcctcggacgcgatcttctcatgggaatcttcgagaag
ggatgggaaaagccaagtccaattcaagaggcttccatcggagtggctttgaccggccaa
gacattcttgccagagctaagaacggaacaggaaagaccggagcctactgcatcccagtc
atcgagaagatccagccagctctcaaggctatccaagctatggtcatcgtcccaacccgt
gaattggctctccagacttcccagatctgcgtcgaactctccaagcacattcaactcaag
gttatggttaccactggtggaactgatcttcgtgacgacatcatgcgtttgaacggaacc
gtccacttggtcatcgccactcctggcagaatcctcgatttgatggagaagggagttgcc
aagatggagaactgcaagactctcgttctcgacgaagcagataagctcctcagtcaagac
ttccagggaatccttgaccgtctcatcaacttcttgccaaaggagcgtcaaatcatgttg
tactcggctactttcccacagactgtcaccaccttcatgcagaagcacatgcacaagcca
tacgagattaacctcatggaggagctcactcttcttggagtcactcaatactatgccttc
gtccaagagaagcagaaggttcactgcttgaacactttgttccgcaagctccagatcaac
cagtcgatcatcttctgcaactccactcaacgtgtcgaacttcttgccaagaaaatcacc
gagatcggatactcgtgctactacatccactccaagatggctcagaaccacagaaaccgc
gttttccacgacttccgtcaaggaaactgcagaaacttggtctgctccgacttgctcacc
agaggtatcgacatccaggctgtcaatgtcgtcatcaacttcgacttcccaagaaacgct
gagacttaccttcacagaatcggtcgctctggacgtttcggtcacctcggagttgctatc
aacctcatcacctacgaggaccgccacactcttcgccgtatcgagcaggagctccgcact
cgcatcgagccaatcccgaagacggttgatccaaagctttacgtcgccgaccagcaactc
gtcgatgctgccgaggacaccaccgcctaa
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