Caenorhabditis briggsae (nematode): CBG_09489
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Entry
CBG_09489 CDS
T01054
Name
(RefSeq) Protein CBG09489
KO
K13114
pinin
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03013
Nucleocytoplasmic transport
cbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CBG_09489
03015 mRNA surveillance pathway
CBG_09489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_09489
03041 Spliceosome [BR:
cbr03041
]
CBG_09489
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CBG_09489
Spliceosome [BR:
cbr03041
]
Complex C
Other components
EJC/TREX
CBG_09489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
RSB_motif
Motif
Other DBs
NCBI-GeneID:
8578993
NCBI-ProteinID:
XP_045094034
WormBase:
CBG09489
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All DBs
Position
V:11006262..11007512
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AA seq
367 aa
AA seq
DB search
MEPMLVEDLESDINAARDKLRTIDDKVTTLNGRPPRQRISYNDEPEDGPLRNVGRDAFGL
KEEAPTWGTRKTIEAPAGVRSRISMEGRVDRRSGGGRQSFDGHKRQRPDHLENDEEEDDF
GKRQKRSVQSTVVMPALDSKGREEKIEKLKETENKDSKQRTKRLFSNLIMGTLSSFKKTE
KKTTQQEKQEAVEKRLEETKKKDLESRREEKHDLLNQRREHEKELLGLQRKKALIQYADH
SVKQLSLMKGWIKTKTNPPIYWQPVKHTVRSMELQQATERQIESESLNACQINERKEQLK
KELDGGNAAEIRAAAKTEDDEEDEYEDDEEKNENEDIEVVLKTEDDLKREEEEDEKEEEI
DVHVELD
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atggagccgatgctagttgaagacctcgagtcggatataaatgcggccagagacaagctg
cgaactatagatgacaaagtaactacactgaatggaagaccacctcgtcagcgtatctcc
tacaacgatgaaccagaagatggtccactcagaaacgtgggacgagatgctttcggactg
aaagaagaagcgccgacatggggcactagaaaaacaattgaagcaccagctggtgttcgc
agtagaattagtatggagggcagagtcgatcgccggagtggcggtggtcgacagagtttt
gacggtcacaaacgtcaacgtccagaccatttggaaaatgatgaagaggaggatgatttc
gggaagcgtcaaaaaagatcagttcagtcaacagtggtgatgcctgctttggactcgaag
ggtagagaggagaagattgagaagctgaaggagacagagaacaaagacagtaagcagaga
actaaacgacttttctcgaacttgattatgggaactctatcctcattcaagaagacggaa
aagaagacaacccaacaagaaaaacaagaagcagttgaaaaacgtctagaggagactaaa
aagaaggatcttgaatctcggagagaagagaaacacgaccttctgaatcaaagacgagag
catgagaaagaattgcttggactgcaacgcaagaaggctttgatccagtacgcagatcat
agtgtcaaacaactgagcttgatgaagggttggataaaaacaaagacgaatccaccaatc
tactggcagccagtgaagcatactgtccgttcgatggagttacagcaagccactgagcgg
caaattgaaagtgagtcattgaacgcatgccagatcaacgagcgtaaggagcagttgaag
aaggaattggatggaggaaacgctgctgagattcgcgcagctgctaagactgaagacgat
gaggaggatgagtacgaagacgacgaggagaaaaatgaaaatgaagacattgaagtggtg
ctgaaaacagaggatgatctaaaaagagaggaagaagaagatgagaaggaggaggaaatc
gatgttcatgttgagctcgattga
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