KEGG   Caenorhabditis briggsae (nematode): CBG_09489
Entry
CBG_09489         CDS       T01054                                 
Name
(RefSeq) Protein CBG09489
  KO
K13114  pinin
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03013  Nucleocytoplasmic transport
cbr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CBG_09489
   03015 mRNA surveillance pathway
    CBG_09489
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_09489
   03041 Spliceosome [BR:cbr03041]
    CBG_09489
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CBG_09489
Spliceosome [BR:cbr03041]
 Complex C
  Other components
   EJC/TREX
    CBG_09489
SSDB
Motif
Pfam: Pinin_SDK_memA RSB_motif
Other DBs
NCBI-GeneID: 8578993
NCBI-ProteinID: XP_045094034
WormBase: CBG09489
LinkDB
Position
V:11006262..11007512
AA seq 367 aa
MEPMLVEDLESDINAARDKLRTIDDKVTTLNGRPPRQRISYNDEPEDGPLRNVGRDAFGL
KEEAPTWGTRKTIEAPAGVRSRISMEGRVDRRSGGGRQSFDGHKRQRPDHLENDEEEDDF
GKRQKRSVQSTVVMPALDSKGREEKIEKLKETENKDSKQRTKRLFSNLIMGTLSSFKKTE
KKTTQQEKQEAVEKRLEETKKKDLESRREEKHDLLNQRREHEKELLGLQRKKALIQYADH
SVKQLSLMKGWIKTKTNPPIYWQPVKHTVRSMELQQATERQIESESLNACQINERKEQLK
KELDGGNAAEIRAAAKTEDDEEDEYEDDEEKNENEDIEVVLKTEDDLKREEEEDEKEEEI
DVHVELD
NT seq 1104 nt   +upstreamnt  +downstreamnt
atggagccgatgctagttgaagacctcgagtcggatataaatgcggccagagacaagctg
cgaactatagatgacaaagtaactacactgaatggaagaccacctcgtcagcgtatctcc
tacaacgatgaaccagaagatggtccactcagaaacgtgggacgagatgctttcggactg
aaagaagaagcgccgacatggggcactagaaaaacaattgaagcaccagctggtgttcgc
agtagaattagtatggagggcagagtcgatcgccggagtggcggtggtcgacagagtttt
gacggtcacaaacgtcaacgtccagaccatttggaaaatgatgaagaggaggatgatttc
gggaagcgtcaaaaaagatcagttcagtcaacagtggtgatgcctgctttggactcgaag
ggtagagaggagaagattgagaagctgaaggagacagagaacaaagacagtaagcagaga
actaaacgacttttctcgaacttgattatgggaactctatcctcattcaagaagacggaa
aagaagacaacccaacaagaaaaacaagaagcagttgaaaaacgtctagaggagactaaa
aagaaggatcttgaatctcggagagaagagaaacacgaccttctgaatcaaagacgagag
catgagaaagaattgcttggactgcaacgcaagaaggctttgatccagtacgcagatcat
agtgtcaaacaactgagcttgatgaagggttggataaaaacaaagacgaatccaccaatc
tactggcagccagtgaagcatactgtccgttcgatggagttacagcaagccactgagcgg
caaattgaaagtgagtcattgaacgcatgccagatcaacgagcgtaaggagcagttgaag
aaggaattggatggaggaaacgctgctgagattcgcgcagctgctaagactgaagacgat
gaggaggatgagtacgaagacgacgaggagaaaaatgaaaatgaagacattgaagtggtg
ctgaaaacagaggatgatctaaaaagagaggaagaagaagatgagaaggaggaggaaatc
gatgttcatgttgagctcgattga

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