KEGG   Caenorhabditis briggsae (nematode): CBG_09713
Entry
CBG_09713         CDS       T01054                                 
Name
(RefSeq) Protein CBG09713
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CBG_09713
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cbr03041]
    CBG_09713
Spliceosome [BR:cbr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    CBG_09713
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    CBG_09713
SSDB
Motif
Pfam: PRP38 PRP38_assoc HIND
Other DBs
NCBI-GeneID: 8579188
NCBI-ProteinID: XP_002637192
WormBase: CBG09713
UniProt: A0AAE9JLX0 A8X8F6
LinkDB
Position
V:10241896..10242940
AA seq 317 aa
MANRTEKTAKTVKGTNPQFLVEKIIRQRIYDSMYWKEHCFALTAELVVDKGMDLRYIGGI
YAGNIKPTPFLCLALKMLQIQPDKDIVLEFIQQEEFKYIRALGAMYLRLTFDSTEIYKYL
EPLYNDFRKLRFMNKMGRFEAIYMDDFIDNLLREDRYCDIQLPRLQRRWALEEVDMLPPY
KSLLDGDLVAMSESDEEEEEETKKEKPRLTSRRRSRSRDREREVGDRREVREREKMRERR
ERGDDEPGPSSCLKDRDERRKDRDRSRERDRRDRKDDERRDRKKESSSRRGADNDEDREI
AEANALRAKLGLAPLER
NT seq 954 nt   +upstreamnt  +downstreamnt
atggcgaatcgcacggagaaaactgctaaaactgttaaaggaacaaatcctcagtttttg
gtggagaaaatcatcagacagcgtatttatgacagtatgtattggaaagaacattgcttt
gcacttacagctgaactcgtcgttgacaaaggaatggatcttcgttatatcggaggaatc
tacgctggaaacatcaaacccacgccatttctctgtcttgctctcaaaatgctacaaatt
caaccggacaaagacattgtactggaattcattcaacaagaagaattcaaatacatcaga
gcgttgggtgcaatgtaccttcgactgacattcgattccacagaaatctataaatatcta
gaaccattgtacaatgattttcgcaagcttcgattcatgaacaaaatgggtcgattcgag
gcaatctacatggatgatttcatcgataacctgctccgggaggatagatactgtgatatc
cagctgccacgcctccaacggcgatgggctctcgaagaagtagacatgttaccaccgtac
aaatcacttcttgatggggatcttgttgcgatgtctgaatctgatgaggaggaagaagag
gaaacgaagaaggagaaaccacgattgacttcaagaagacgtagtcgtagtcgtgatcgt
gaaagagaagttggtgacagacgagaagtacgggaacgagagaaaatgagagaacgtcga
gaaagaggagacgatgagccaggcccaagcagctgtttgaaagatcgggatgaacgaaga
aaggatcgtgacagaagtcgtgagagagatcgcagagacagaaaagatgatgagcgacga
gatcggaagaaggagtcgtcttctcgtcgtggtgctgacaatgatgaagaccgcgagatt
gcagaggcgaatgctctccgtgcaaaacttggattggctcccctcgagcgataa

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