Caenorhabditis briggsae (nematode): CBG_09713
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Entry
CBG_09713 CDS
T01054
Name
(RefSeq) Protein CBG09713
KO
K12849
pre-mRNA-splicing factor 38A
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CBG_09713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbr03041
]
CBG_09713
Spliceosome [BR:
cbr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CBG_09713
Complex C
U4/U6.U5 tri-SnRNP related factors
CBG_09713
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
8579188
NCBI-ProteinID:
XP_002637192
WormBase:
CBG09713
UniProt:
A0AAE9JLX0
A8X8F6
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Position
V:10241896..10242940
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AA seq
317 aa
AA seq
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MANRTEKTAKTVKGTNPQFLVEKIIRQRIYDSMYWKEHCFALTAELVVDKGMDLRYIGGI
YAGNIKPTPFLCLALKMLQIQPDKDIVLEFIQQEEFKYIRALGAMYLRLTFDSTEIYKYL
EPLYNDFRKLRFMNKMGRFEAIYMDDFIDNLLREDRYCDIQLPRLQRRWALEEVDMLPPY
KSLLDGDLVAMSESDEEEEEETKKEKPRLTSRRRSRSRDREREVGDRREVREREKMRERR
ERGDDEPGPSSCLKDRDERRKDRDRSRERDRRDRKDDERRDRKKESSSRRGADNDEDREI
AEANALRAKLGLAPLER
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcgcacggagaaaactgctaaaactgttaaaggaacaaatcctcagtttttg
gtggagaaaatcatcagacagcgtatttatgacagtatgtattggaaagaacattgcttt
gcacttacagctgaactcgtcgttgacaaaggaatggatcttcgttatatcggaggaatc
tacgctggaaacatcaaacccacgccatttctctgtcttgctctcaaaatgctacaaatt
caaccggacaaagacattgtactggaattcattcaacaagaagaattcaaatacatcaga
gcgttgggtgcaatgtaccttcgactgacattcgattccacagaaatctataaatatcta
gaaccattgtacaatgattttcgcaagcttcgattcatgaacaaaatgggtcgattcgag
gcaatctacatggatgatttcatcgataacctgctccgggaggatagatactgtgatatc
cagctgccacgcctccaacggcgatgggctctcgaagaagtagacatgttaccaccgtac
aaatcacttcttgatggggatcttgttgcgatgtctgaatctgatgaggaggaagaagag
gaaacgaagaaggagaaaccacgattgacttcaagaagacgtagtcgtagtcgtgatcgt
gaaagagaagttggtgacagacgagaagtacgggaacgagagaaaatgagagaacgtcga
gaaagaggagacgatgagccaggcccaagcagctgtttgaaagatcgggatgaacgaaga
aaggatcgtgacagaagtcgtgagagagatcgcagagacagaaaagatgatgagcgacga
gatcggaagaaggagtcgtcttctcgtcgtggtgctgacaatgatgaagaccgcgagatt
gcagaggcgaatgctctccgtgcaaaacttggattggctcccctcgagcgataa
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