Caenorhabditis briggsae (nematode): CBG_09775
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Entry
CBG_09775 CDS
T01054
Name
(RefSeq) Protein CBG09775
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CBG_09775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbr03041
]
CBG_09775
Enzymes [BR:
cbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBG_09775
Spliceosome [BR:
cbr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
CBG_09775
Complex B
CBG_09775
Complex C
U2 SnRNP specific factors
CBG_09775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
8583475
NCBI-ProteinID:
XP_045094107
WormBase:
CBG09775
UniProt:
A8X9L5
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All DBs
Position
III:complement(8481322..8484259)
Genome browser
AA seq
820 aa
AA seq
DB search
MWRGKYTGNYHNRFVSAKSSGTSSLSDGQSMNNVPPPAALTVGNAPVPPPNRNVFMSSRK
EQEMKKEQEYANLMAYGSTSEKQADENGSTMMSIYLEGGSDDEKPSKSSSSIPDDDEEED
ELDAFMAGIEKQATKDKKVSEQKEKDRKEGKDTEDPSKKGLGRADIDEEDMQESLFKFME
EYKEKHENDEEQYEYDEDGNIIWTWKKVIDPLPDIDHTQIQYPKFNKNFYEEHDDIKLCF
RRLQYLDIIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEAIRKSEYEQPTPIQAMAI
PSALSGRDVLGIAKTGSGKTAAYLWPAIVHTMDQPDLKEGEGPVAVIVVPTRELAIQVYQ
EAKRFCKVYNINVICAYGGGSKWEQSNELQNEGAEMVVCTPGRIIDLVKMEATNFLRTTF
LVFDEADRMFDMGFEAQVKSISDHVRPDRQCLMFSATFKQKVERLARDALVDPVRIVQGE
VGEANADIEQKVYVMQNQDVKFHWLIRNLVEFASLGKVLIFVTKKLDSEDLAKKLKLKDF
DIVLLHGDMLQAERNENLLKFRKKSQILVATDVAARGLDISEIRTVVNFDMARDIDTHVH
RIGRTGRAGHRGTAYTLVTEKDIETVGHLVKNLESVSQEVPKPLMDLAMKCAWFRSQRAG
HGGPSTGTQARGRTGLGYTPKVRTGGPGAQGGQQYDPLKDQRNSKGGSGYGGSTNQTVDG
MVQSAQRLATSSGGVPASGANRAQMLKSAFQKSFQSTFQRPTNESSNLPTQVASDPRPEW
KKKVDELNARIAQQHQQNQSSSSSSSSAPSSSSSKRSRWE
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgagggaaatacaccgggaattatcataatcgatttgttagcgccaagtcgtct
ggaacttctagtttaagtgatggacaaagtatgaacaatgtaccccctcctgctgcttta
accgtcggaaatgctccagtcccaccaccaaatcgtaatgttttcatgagcagtcgtaaa
gagcaagaaatgaaaaaagaacaagagtacgcaaatcttatggcatatggatcaacatct
gagaaacaagcagacgaaaacggatctacgatgatgagtatatatttggaaggcggatcg
gatgacgaaaaaccttcgaaatcttcatcttcaatacctgatgatgacgaagaagaagac
gagctggacgctttcatggctggaatcgagaaacaagccacgaaggacaaaaaagtttct
gaacaaaaggagaaggatagaaaagaaggaaaagacacagaggatccaagtaagaaagga
ctcggaagagctgatatcgatgaagaagatatgcaagaatctcttttcaaattcatggaa
gaatacaaagaaaaacatgaaaatgacgaagaacaatatgaatatgatgaggatggaaat
atcatttggacatggaaaaaagttattgacccgttaccagacattgatcacacgcagatt
caatatccgaaattcaataaaaatttttacgaggagcatgatgatatcaagttatgtttc
agacgtcttcaatatttggatatcattcgtcttcagaacacaatgaatctccgcgtaggt
ggtctcaagccaccccgtcctgtgtgctcgtttgctcatttttcttttgataagctgtta
atggaggccatccgtaaaagcgagtacgaacaaccaactccaatccaagctatggccatc
ccgtccgctttatccggcagagacgttctaggaattgccaaaactggatctggaaaaact
gctgcgtacctctggcctgcaattgttcatacaatggatcaaccagatctgaaagaagga
gaaggacctgttgcagttattgtggttcccaccagagagttggcgattcaggtgtaccaa
gaagcaaaacgattttgcaaagtctataacatcaatgtcatttgtgcctatggaggtggc
agcaaatgggagcagtccaacgaattgcagaatgaaggggctgaaatggttgtttgcact
cctggccgtattattgacttggttaaaatggaagctaccaattttctacgtacgacattc
ctagtatttgacgaagccgatcgtatgttcgatatgggttttgaagctcaagtgaaatct
atttcggatcatgttcgtccagatcgccaatgtcttatgttcagtgcaacattcaagcaa
aaagtcgagagactcgctcgtgatgctcttgtggatccggttagaattgtgcaaggagaa
gttggagaagcgaatgcagatatcgaacaaaaggtatatgtgatgcagaaccaagacgtt
aaattccattggctcatcagaaatcttgtcgaatttgcttcccttggaaaagttcttatt
ttcgtcacgaaaaaattggattctgaagatcttgcaaagaaactgaagctcaaagatttt
gatatcgtgctgcttcatggagatatgcttcaagcagaaagaaacgaaaacttgttgaag
ttccgcaaaaagtcacagatcctcgtagctacagatgttgctgctcgtggtctcgatatt
tctgaaattcgaactgtcgtgaactttgatatggctcgtgatatcgatacccatgttcat
cgaattggaagaactggacgtgctggacacagaggaaccgcctacaccctagtcactgag
aaagatatcgaaacggtaggacacttggtcaagaatcttgagagtgtatcgcaagaagtt
ccaaaaccactaatggatcttgcaatgaaatgcgcatggttccgatcacaaagagctggg
catgggggtcctagtactggtacacaagctcgaggtagaacaggtctaggatatacgccc
aaagtacggacaggagggcctggcgcacaaggcggacaacagtatgatccactgaaggac
caaaggaacagtaaaggtggttctggttacggtggatctacaaatcaaacagtagacgga
atggtccagagtgctcagagattagctacatcatcagggggtgtaccagcttcaggagca
aacagagcgcagatgctgaaaagtgccttccagaaatcgttccaatcaacattccaacgt
ccaacaaatgagtcatccaatcttccgacccaggtggcttcagatccacgaccagaatgg
aagaaaaaagttgacgaattgaatgctcgaattgcacaacaacatcaacaaaatcagtct
tcttcttcttcttcttcgtctgcgccttcttcttcttcgtccaagaggagtcgctgggaa
tga
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