Caenorhabditis briggsae (nematode): CBG_09937
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Entry
CBG_09937 CDS
T01054
Symbol
Cbr-mog-1
Name
(RefSeq) Protein CBR-MOG-1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CBG_09937 (Cbr-mog-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbr03041
]
CBG_09937 (Cbr-mog-1)
Enzymes [BR:
cbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CBG_09937 (Cbr-mog-1)
Spliceosome [BR:
cbr03041
]
Complex C
Other components
Step II factors
CBG_09937 (Cbr-mog-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
Microtub_bd
SRP54
AAA_30
ATPase
Flavi_DEAD
PhoH
T2SSE
TssR_VWA
AAA_29
AAA_23
ABC_tran
Motif
Other DBs
NCBI-GeneID:
8583608
NCBI-ProteinID:
XP_045094151
WormBase:
CBG09937
LinkDB
All DBs
Position
III:9104048..9107224
Genome browser
AA seq
990 aa
AA seq
DB search
MSKKQADDRLEGSNDTFGGLVIKKKKVEGDDSKQPAASSGKSLLGLDKLASTKREYARKR
LEDDDDRGVTESVRKGIEMVHEKHRDRDDRGMKYKSKDDDRKRDRDRDRNHHYDRSDRSD
RRNDSSRRDWKDRRGDETPRFKVPETPSRMSWDQDEGSTRKKNSWDKPTRRDEXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXRRREMEDRKKAQDKHWELAGSKLGNLMGVKEKPD
ETANPEDDDSGNYKESHQFASHMKDNEAVSDFAMEKTIKQQREYLPVFACRQKMMNVIRE
NNVVIIVGETGSGKTTQLAQYLLEDGFGEAGLIGCTQPRRVAAMSVARRVADEMGVELGQ
DVGYAIRFEDCTSEKTIIKYMTDGILLRECLGDGTLDQYSAIIMDEAHERSLNTDVLFGL
LREVVAKRSDLKLIVTSATMDADKFADFFGGNCPTFTIPGRTFPVELFHARTPVEDYVDA
AVKQAVTIHLGAMDGDILIFMPGQEDIECTCEMIKEKLGELDEAPPLAVLPIYSQLPSDL
QAKIFQRAPGGMRKAIVATNIAETSLTVDGILFVIDPGFCKMKVYNPRIGMDALSIFPVS
QASANQRTGRAGRTGPGQCYRLYTERQFKDELLVSVFFNFFIYFNFFQRSTVPEIQRTNL
ANVVLLLKSLNVDDLLKFHFMDAPPQDNMLNSMYQLWTLGALDNTGQLTPMGRKMVEFPL
DPTLSKMLIVSAEMGCSDEVLTIVSMLSVPAIFFRPKGREEEADAKKEKFQVPESDHLTF
LNVYLQWREHKYSAKWCADNYLHVKALKKVREVRAQLKEIMQDLKLPIVSNGNEWDIVRK
CICSAYFHNAARLKGIGEYVNVRTGIPCFLHPTSALFGMGFMPDYVVYHELIMTAKEYMQ
CVTAVDAIWLAELGPMFYSIKESKQSRREQKMESVRTVETMEAEMREAQKEMERRKEESD
KAFKRPESSRRVVEVGAKSVRSERRKLWGL
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaaacaggcagatgatcgacttgaaggctcaaatgatacttttggtggactt
gtcataaagaagaaaaaagtggaaggagatgattcaaaacagcctgctgcatcgtcgggg
aaaagtttattaggccttgacaagcttgcatcgacaaagcgagaatatgccagaaagcgg
ttggaagacgatgatgacagaggcgtgacagaatcagttcgaaaaggaatagagatggtt
catgaaaagcacagagatagagacgatcgaggaatgaagtataaaagcaaagatgatgat
cgaaaacgggatagggatagagacagaaaccaccattacgatcgttctgaccgttctgac
cgtagaaatgatagcagtagaagagattggaaggacagaagaggagatgaaacgccgaga
ttcaaagtgcctgagacaccgtccagaatgagttgggatcaagatgaaggttcaacaaga
aaaaagaacagttgggacaagcccacacgtagagacgagannnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnaagacggagagagatggaagatagaaaaaaagctcaagataag
cattgggaattggctggatccaaactgggaaacctgatgggtgtcaaagaaaaacctgat
gaaactgcgaacccagaggatgatgactctggcaactacaaagaatcacaccagtttgct
tctcacatgaaggacaatgaagctgtttccgactttgctatggaaaagaccatcaagcag
cagcgagagtatctgcccgtatttgcatgtagacaaaaaatgatgaacgttattcgagaa
aataatgttgtcattattgttggagaaaccggatcaggaaagacaactcagctagctcaa
tatctacttgaagacggatttggagaggccggactgattggatgtacacagccaaggcgt
gtagcagcaatgagtgttgctagacgtgtagctgacgaaatgggtgttgagctcggacaa
gatgttggatatgcgattcgtttcgaggactgtacttctgagaagactatcatcaagtat
atgacggatggtatcctccttcgtgaatgtcttggagacggaactcttgaccaatactcg
gctatcattatggacgaagctcacgaacgttcccttaacactgatgtgctctttggactt
cttagagaagttgtagcaaaacgctccgatctgaaactgattgtgacttccgctaccatg
gacgcagataaatttgcggacttcttcggaggaaactgcccaactttcactattcctgga
agaacgttccctgttgagctgttccatgcaagaacgcctgtcgaagattacgtcgatgct
gccgttaagcaagctgttactattcacttgggagcaatggatggagatattttgatcttc
atgcctggtcaagaagatattgagtgtacttgtgaaatgatcaaagagaaactaggtgaa
ttggatgaagctccacctcttgctgttcttccgatctattcgcaacttcccagtgatttg
caagccaaaattttccaacgagctccaggaggtatgagaaaggctatcgttgctacgaac
atcgcagaaacttctctgaccgttgatggaattcttttcgtgattgatcctggattctgt
aagatgaaggtgtacaatccgagaattggtatggacgccttgtcgattttcccagtctcg
caggcatctgctaatcagcggacgggtcgtgcgggacgtacgggaccagggcaatgttac
cgtttgtatacggaaaggcagtttaaagatgagcttctagtaagtgtttttttcaatttt
tttatttacttcaatttttttcagagaagtactgttccggaaattcaaagaacaaatcta
gccaatgtggtactcctcttgaaatcactcaacgttgacgatctcctcaaatttcatttc
atggatgctcctccacaggataacatgctcaattcaatgtatcaactttggacacttgga
gctctagataacaccggccaactaactccaatgggtcgcaaaatggttgaattcccactc
gatccaacgctgtctaaaatgttgattgtgtccgcagaaatgggttgcagtgatgaagtt
ctgacaatcgtttctatgctttctgtacctgctatattcttccgaccaaaaggaagagaa
gaagaagctgatgccaagaaggaaaagtttcaagttcctgaatctgatcatctcactttc
ctcaacgtctacttacaatggagagaacataagtattcagcaaaatggtgcgcagacaat
tacctacatgtcaaagcattgaaaaaggttcgagaagttcgtgcacagcttaaggaaatc
atgcaagacctcaagctcccaatcgtatccaatggaaacgaatgggatattgtcagaaaa
tgtatttgttccgcgtacttccataacgctgctcgcctcaaaggtattggagagtatgtc
aacgtgcgtaccggaattccatgctttcttcatccgacttcagcgctctttgggatgggt
ttcatgcccgattatgtggtttatcacgaactgattatgactgccaaagaatacatgcaa
tgcgtaacagcagtagatgccatctggcttgctgaacttggtcccatgttctactcgatc
aaagaatcgaaacaatcccgacgagaacaaaaaatggagagtgttcgaacagttgaaacg
atggaagcggaaatgcgagaggcgcagaaagagatggaaagacggaaagaggaaagtgac
aaagcattcaagcgaccagagtcctccagacgcgtcgttgaagtcggtgcgaaatcggtc
agatcggagagaagaaagctatgggggctttga
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