Caenorhabditis briggsae (nematode): CBG_10075
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Entry
CBG_10075 CDS
T01054
Name
(RefSeq) Protein CBG10075
KO
K15176
RNA polymerase-associated protein CTR9
Organism
cbr
Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbr03021
]
CBG_10075
Transcription machinery [BR:
cbr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
CBG_10075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_16
TPR_12
TPR_14
TPR_CcmH_CycH
TPR_8
TPR_17
TPR_11
ANAPC3
ARM_TT21_4th
TPR-S
TPR_10
HEAT_Nup120
COP9_hel_rpt
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
8583730
NCBI-ProteinID:
XP_045094195
WormBase:
CBG10075
LinkDB
All DBs
Position
III:complement(<9557994..>9562434)
Genome browser
AA seq
1263 aa
AA seq
DB search
MEEDNDEVPEIRTIAIPLKDSQEDGTHLKRLRRFSIEVWNLTQNWATASEKSVQYVESII
NSRLKLLYSKDDKADESAKLTKDQTDRIFNDIVVANSKLNQTMSDFERIISKFEVARGRM
SAWKLLTEKSSNAEEKYIEVIEINCSELPDGAEVLSILEAEEAKLSYWIEVALEYFRQDR
VQPFMEILEAAGTRAGLEYDGVKQDQMRALDILAAYWMTQGYRERAKDKKQDFFSKATVL
FNTADKIAMYEWSHLTVRAWFYLFERDKSTNKYELADQQFNYVVKTYPQNVLPLIGKAVI
AFNKKDYKTAIFYFRKAIRQRRYSIADLRVGIGYCFAKMGLVDKSKLAFERALELEPDNV
SAMCGLGIILLNTLEQDNLKIAVNLFGRAYHAQPDQPVALVHLANHFFFKGEVERAWQLS
WHAASNDCDSIKAEAFYQMGRCRHTQGQYDGAYKYYYQARQANNQEHTLAHYGLGQMYIH
RNEIEEAIKCFEVVHQRLPHNTDTMKILGSLYAHVQLADPARTNEARQKGRDVLAKYLNI
EAEDCEACIDLAQLLESTDSKKSLELYERAIDLLEAFEQIPPQPEMLNNVGALHMSMKQF
DKAEHYFKKAKESLEEQLSSEAAQFSDRRAAPERSHLLTIRYNLARCLEHLCRTSEAEQM
YKDIISECPGYTDGYLRLGCIARDRHQVYEASLSFKQGVQFDQSSPVVWTLIGNLHYAKN
EWMPAQKKFEFILSKIYNNKTPDPYSLVALGNVWIEQLLNPSRKKEDEKKYMDRALQMYQ
KALKLEPKNMYAANGIGCVLAYKRNWNDARDVFSQVRESTSEFYDVWMNIAHVFMEREQW
MSAVQMYSSAMKKFRKENDAMLLHYLAKAYYRANMLSEAKEALERAMLDQLDNTQLKFNY
AIVLKKSAKEILRGHKMTSQQVNTAISDLTFAEKIFQYISKNDDRQASHTGMRISRTACS
EEAKNCRDLLTQAKHKLAAAQTQDEEERRLIEKQEKEKIALKNKLMEEARAREEAEKKRI
EDAKNLRLSFIEMTKDVLRLPEIVEEKRRGGGGRKRRNDDGDEFVNDSSDAGNYDGEEGG
EDGERRERRKKDKAAKKASRKKRERRDSDGGSDSNRRDEKKRKRKEEKARKLEEKLSAKQ
SAKIKSRAFLSSSESSDDDKPKPAADSSDEEEDERPPVNEFDSPDSNAGSDEEMAAAKKK
KKKAVVDSDEGSDNSDDDRPIIGASDEMSYFSEDDDDKPAAGGASSSSDSDVPKEKVVES
DSD
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagataacgatgaagttccggagatcagaaccatcgctattcctttgaaggac
agtcaggaagatggtacccacctaaaacgtctccgccggttctctatcgaagtttggaac
ttaacacaaaattgggcgacggcatctgaaaaatccgttcaatatgtcgaatcaataatc
aattcacgactcaaactgctttattcaaaagacgacaaggcagatgaatccgcgaaattg
acaaaagatcaaactgacagaattttcaatgatattgtcgttgcgaattctaaattgaat
caaacaatgtcggattttgaacgaatcatttcgaaatttgaagttgctcgaggaagaatg
tctgcttggaaactgttgacagagaaaagttcaaatgctgaggaaaagtatattgaagtt
atcgaaataaactgttccgaactaccagatggagccgaagtcttgagcatattggaagca
gaagaagcaaagttgtcatactggatcgaagtggctctggaatatttccgacaagatcgc
gtccaacctttcatggagattctagaagcagctggcactcgcgccggattagaatatgat
ggtgtgaaacaggatcagatgagagctctggatattcttgctgcctattggatgacacaa
ggatacagagaaagagcaaaggacaagaagcaggatttcttctcgaaagctaccgttctc
ttcaacactgcagacaaaatagccatgtatgaatggtctcatttgactgttcgtgcttgg
ttctatcttttcgaaagggataaaagtaccaacaagtatgagttggcagatcagcaattc
aactacgtcgttaaaacatatccacaaaatgtgctcccgttgattggaaaagctgtcatt
gcattcaacaagaaagattacaaaactgcaattttctacttccgcaaagccatccgtcaa
cgtcgctactcgatcgcggatcttcgtgtcggaatcggttattgcttcgctaaaatggga
ttggtggacaagtcaaaattggcatttgagagagctctcgagctggagccagacaatgtt
tctgcaatgtgtggattgggaataattctgttgaacacattagaacaagataatctcaaa
attgctgtaaacttgtttggaagagcctatcatgcacaaccagatcagccagtggcactc
gttcatctagccaatcatttcttcttcaaaggagaagtggaacgagcgtggcagctatca
tggcatgcagcatcaaatgactgtgactctatcaaagctgaagcgttctaccaaatggga
aggtgtcggcatacacaaggacagtatgacggagcttataagtattactaccaagctcgt
caagccaacaatcaagagcacactcttgctcactacggtctcggtcagatgtatattcat
cgcaacgaaatcgaagaagccataaaatgtttcgaagttgttcatcagcgtttgccacat
aacactgacacaatgaagattctcggaagtctctatgcacatgtacagttggctgatcca
gcacgcaccaatgaggcaagacaaaaaggacgagatgtgctggcaaagtacttgaacatt
gaggcggaagactgcgaagcttgtattgatttggcacaacttctcgaatcaacagactcc
aaaaaatctcttgaattgtacgaacgagcaattgatttgttggaggcattcgaacagatc
ccaccacaaccagaaatgctcaacaacgttggagctctccacatgtcaatgaaacaattt
gacaaagccgaacattatttcaaaaaagccaaggagagtcttgaagaacaattgagctca
gaagcagcacagttttcggaccgtagagctgctccagaacgctcacaccttctcacgatc
cgctataatttggcccgctgtttggaacatctctgtcgtacttctgaagccgagcagatg
tataaggacatcatctctgagtgcccaggatatactgacggatatcttcgtcttggatgt
atcgccagagatcgtcatcaagtttatgaagcctcgttgtcgttcaaacaaggagttcaa
tttgatcagtcatcgccagttgtttggacattgattggaaatctgcattatgccaaaaac
gaatggatgccagcacagaagaaatttgaattcattctatccaagatatataacaacaag
acacctgatccatattcgttggtagcgctgggtaatgtgtggatagagcaactattgaat
ccatcaagaaagaaggaagatgagaagaaatacatggatcgtgctcttcaaatgtaccag
aaggctttgaaactggaaccaaaaaatatgtacgctgcaaatggcatcggttgtgttcta
gcatacaaacgaaactggaacgatgctcgtgacgttttctctcaagttcgtgaatcgacc
agcgagttctacgatgtctggatgaacatagcccacgttttcatggagagagaacaatgg
atgtctgcagtccaaatgtattcatcagctatgaaaaagttccgaaaggagaacgatgct
atgcttttgcattaccttgcaaaggcttattatcgcgctaatatgctcagtgaggcgaag
gaagctcttgagagagcaatgctcgatcagttggataacactcagctcaaattcaattat
gctattgttttgaaaaagtctgcgaaggagatacttcgtgggcacaaaatgacatctcaa
caagtaaacactgctataagcgacctgacatttgctgaaaagattttccaatacatctcc
aagaacgatgaccgtcaagccagtcacactggaatgcgaatttcaagaaccgcttgttcg
gaagaagcgaagaactgtagagatctgttgactcaagcgaaacataaactggctgctgca
cagactcaggatgaggaggaacgacggttgatagagaagcaagaaaaggagaagatagca
ttgaaaaataagctgatggaagaagcaagagctcgagaagaggctgaaaagaagagaatc
gaggatgcaaagaatcttcgattatcgttcatagaaatgaccaaggatgtgctgaggctt
ccagagattgtagaggagaaacgaagaggcggaggtggtcgtaagcgacgaaacgatgat
ggagacgaatttgtcaatgacagttcggatgccggaaactatgatggggaagaaggtggc
gaggatggcgagagacgagaacgtcggaagaaggataaggcagcaaagaaggcgtcgaga
aagaagagagagcgaagagatagtgacggaggatcagattcaaacagacgagatgagaag
aagagaaagagaaaggaggagaaggcgagaaaacttgaagaaaagctctcagccaaacag
tccgcgaagatcaagtcacgtgcattcctgtcgtcatctgaatcttctgatgatgataag
ccaaaaccagctgctgattcttcagatgaagaggaagacgagagaccgccagtgaatgag
tttgatagtcctgatagtaatgccggtagtgatgaggagatggcggcagcgaagaaaaaa
aagaagaaggctgtcgtggattctgatgagggttctgacaattctgatgatgacagaccg
attattggagcttcagatgaaatgtcttatttttcagaggacgacgatgacaagccggct
gccggtggtgcctccagtagtagtgacagtgatgtgccaaaggagaaagtagtagaaagt
gacagcgattag
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